WormBase Tree Display for Gene: WBGene00011887
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WBGene00011887 | SMap | S_parent | Sequence | T21B10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | set-17 | Person_evidence | WBPerson1730 | |||||
WBPerson268 | |||||||||
WBPerson632 | |||||||||
Sequence_name | T21B10.5 | ||||||||
Molecular_name | T21B10.5a | ||||||||
T21B10.5a.1 | |||||||||
CE51660 | |||||||||
T21B10.5b | |||||||||
CE51577 | |||||||||
T21B10.5b.1 | |||||||||
Other_name | CELE_T21B10.5 | Accession_evidence | NDB | BX284602 | |||||
Public_name | set-17 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 03 May 2007 10:33:07 | WBPerson2970 | Name_change | CGC_name | set-17 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | set | ||||||||
Allele (16) | |||||||||
Strain | WBStrain00027569 | ||||||||
WBStrain00027619 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00002064 | ||||||||
00002065 | |||||||||
00002066 | |||||||||
00002067 | |||||||||
00002068 | |||||||||
00002069 | |||||||||
00002070 | |||||||||
00002071 | |||||||||
00002072 | |||||||||
Ortholog (27) | |||||||||
Structured_description | Concise_description | set-17 encodes a SET domain-containing protein orthologous to human PRDM11 and PRDM7 (Q9NQW5-2; OMIM:609759); SET-17 is expressed in many or all cells of embryo, and several postembryonic tissues (hypodermis, muscle, and excretory cell); neither set-17(n5017) nor set-17(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 11 Oct 2007 00:00:00 | ||||||||
Automated_description | Enables histone H3K4 methyltransferase activity. Predicted to be involved in chromatin remodeling and methylation. Predicted to be located in nucleus. Expressed in several structures, including body wall musculature; excretory cell; intestine; primary spermatocyte; and vulval muscle. Is an ortholog of human PRDM7 (PR/SET domain 7). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T21B10.5a | |||||||
T21B10.5b | |||||||||
Corresponding_transcript | T21B10.5a.1 | ||||||||
T21B10.5b.1 | |||||||||
Other_sequence (24) | |||||||||
Associated_feature | WBsf650381 | ||||||||
WBsf223569 | |||||||||
WBsf223570 | |||||||||
WBsf223571 | |||||||||
Transcription_factor | WBTranscriptionFactor000278 | ||||||||
Experimental_info | RNAi_result | WBRNAi00115778 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00089590 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00091482 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018944 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113451 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00089620 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053688 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00038649 | ||||||||
Construct_product | WBCnstr00038649 | ||||||||
Microarray_results (27) | |||||||||
Expression_cluster (100) | |||||||||
Interaction (23) | |||||||||
Map_info | Map | II | Position | 0.935542 | Error | 0.000773 | |||
Positive | Positive_clone | T21B10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (15) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |