WormBase Tree Display for Gene: WBGene00011629
expand all nodes | collapse all nodes | view schema
| WBGene00011629 | SMap | S_parent | Sequence | T08G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-13 | Person_evidence | WBPerson1626 | |||||
| Sequence_name | T08G11.1 | ||||||||
| Molecular_name | T08G11.1a | ||||||||
| T08G11.1a.1 | |||||||||
| CE13443 | |||||||||
| T08G11.1b | |||||||||
| CE30353 | |||||||||
| T08G11.1b.1 | |||||||||
| Other_name | CELE_T08G11.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | vps-13 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Oct 2023 01:37:05 | WBPerson51134 | Name_change | CGC_name | vps-13 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (133) | |||||||||
| Strain | WBStrain00002010 | ||||||||
| WBStrain00002109 | |||||||||
| WBStrain00032414 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00084926 | ||||||||
| 00084927 | |||||||||
| 00084928 | |||||||||
| 00084929 | |||||||||
| Contained_in_operon | CEOP1508 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00016120 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in protein retention in Golgi apparatus and protein targeting to vacuole. Predicted to be extrinsic component of membrane. Expressed in vulval muscle. Human ortholog(s) of this gene implicated in Parkinson's disease 23; choreaacanthocytosis; and choreatic disease. Is an ortholog of human VPS13A (vacuolar protein sorting 13 homolog A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0050766 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1908) | ||||
| DOID:0060896 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:23594) | ||||||
| DOID:12859 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1908) | ||||||
| Molecular_info | Corresponding_CDS | T08G11.1a | |||||||
| T08G11.1b | |||||||||
| Corresponding_transcript | T08G11.1a.1 | ||||||||
| T08G11.1b.1 | |||||||||
| Other_sequence (91) | |||||||||
| Associated_feature | WBsf655294 | ||||||||
| WBsf664614 | |||||||||
| WBsf716664 | |||||||||
| WBsf220002 | |||||||||
| WBsf220003 | |||||||||
| WBsf220004 | |||||||||
| WBsf220005 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004172 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00113436 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116980 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052879 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram847 | ||||||||
| Expr402 | |||||||||
| Expr6640 | |||||||||
| Expr6641 | |||||||||
| Expr1010239 | |||||||||
| Expr1035120 | |||||||||
| Expr1156477 | |||||||||
| Expr2006007 | |||||||||
| Expr2024221 | |||||||||
| Drives_construct | WBCnstr00002793 | ||||||||
| WBCnstr00004418 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (144) | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | I | Position | 3.29791 | |||||
| Positive | Positive_clone | T08G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
