WormBase Tree Display for Gene: WBGene00011514
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| WBGene00011514 | SMap | S_parent | Sequence | T06C12 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | fbxa-198 | Person_evidence | WBPerson655 | ||||||
| Sequence_name | T06C12.5 | |||||||||
| Molecular_name | T06C12.5 | |||||||||
| Other_name | CELE_T06C12.5 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | fbxa-198 | |||||||||
| DB_info | Database | AceView | gene | 5Q347 | ||||||
| WormQTL | gene | WBGene00011514 | ||||||||
| NDB | locus_tag | CELE_T06C12.5 | ||||||||
| NCBI | gene | 13217164 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 05 Apr 2005 12:38:41 | WBPerson1846 | Event | Changed_class | CDS | Pseudogene | ||||
| 3 | 01 Mar 2007 11:55:19 | WBPerson2970 | Name_change | CGC_name | fbxa-198 | |||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | fbxa | |||||||||
| Allele (33) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Contained_in_operon | CEOP5535 | |||||||||
| Paralog | WBGene00015598 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | ||||||
| Curator_confirmed | WBPerson567 | |||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | |||||||||
| Automated_description | Enriched in germ line and head mesodermal cell based on RNA-seq studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on RNA-seq and microarray studies. Is affected by eleven chemicals including rotenone; manganese chloride; and stavudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | T06C12.5:wp142 | ||||||||
| Corresponding_pseudogene | T06C12.5 | |||||||||
| Other_sequence | CRC08869_1 | |||||||||
| CR06400 | ||||||||||
| Experimental_info | Microarray_results | SMD_T06C12.5 | ||||||||
| 182531_at | ||||||||||
| A_12_P119248 | ||||||||||
| A_12_P170907 | ||||||||||
| A_12_P170908 | ||||||||||
| Aff_T06C12.5 | ||||||||||
| GPL19516_CGZ0033686 | ||||||||||
| GPL21109_T06C12.5 | ||||||||||
| GPL9450_T06C12.5 | ||||||||||
| cea2.i.43847 | ||||||||||
| Expression_cluster (49) | ||||||||||
| Map_info | Map | V | Position | 9.03445 | Error | 0.00237 | ||||
| Positive | Positive_clone | T06C12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00012854 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
