WormBase Tree Display for Gene: WBGene00011109
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WBGene00011109 | SMap | S_parent | Sequence | R07E5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | gpch-1 | |||||||
Sequence_name | R07E5.1 | ||||||||
Molecular_name (3) | |||||||||
Other_name | CELE_R07E5.1 | Accession_evidence | NDB | BX284603 | |||||
Public_name | gpch-1 | ||||||||
DB_info | Database | AceView | gene | 3F501 | |||||
WormQTL | gene | WBGene00011109 | |||||||
WormFlux | gene | WBGene00011109 | |||||||
NDB | locus_tag | CELE_R07E5.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00011109|UniProtKB=Q21827 | |||||||
family | PTHR13384 | ||||||||
NCBI | gene | 175574 | |||||||
RefSeq | protein | NM_065492.5 | |||||||
SwissProt | UniProtAcc | Q21827 | |||||||
TREEFAM | TREEFAM_ID | TF314717 | |||||||
UniProt_GCRP | UniProtAcc | Q21827 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 17 Mar 2020 17:44:33 | WBPerson1983 | Name_change | CGC_name | gpch-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | gpch | ||||||||
Allele (39) | |||||||||
Strain | WBStrain00037042 | ||||||||
In_cluster | conserved_miRNA_siRNA_cluster | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00073022 | ||||||||
00073023 | |||||||||
00073024 | |||||||||
00073025 | |||||||||
00073026 | |||||||||
00073027 | |||||||||
00118406 | |||||||||
00118407 | |||||||||
Contained_in_operon | CEOP3184 | ||||||||
Ortholog (39) | |||||||||
Structured_description | Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be located in nucleus. Is an ortholog of human GPATCH1 (G-patch domain containing 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | R07E5.1 | |||||||
Corresponding_transcript | R07E5.1.1 | ||||||||
Other_sequence (27) | |||||||||
Associated_feature | WBsf224737 | ||||||||
Experimental_info (7) | |||||||||
Map_info | Map | III | Position | -3.17533 | |||||
Positive | Positive_clone | R07E5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |