WormBase Tree Display for Gene: WBGene00011034
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| WBGene00011034 | SMap | S_parent | Sequence | R05D11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | paxt-1 | Paper_evidence | WBPaper00044759 | |||||
| Person_evidence | WBPerson2384 | ||||||||
| Sequence_name | R05D11.6 | ||||||||
| Molecular_name | R05D11.6 | ||||||||
| R05D11.6.1 | |||||||||
| CE32473 | |||||||||
| Other_name | CELE_R05D11.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | paxt-1 | ||||||||
| DB_info | Database | AceView | gene | 1J173 | |||||
| WormQTL | gene | WBGene00011034 | |||||||
| WormFlux | gene | WBGene00011034 | |||||||
| NDB | locus_tag | CELE_R05D11.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011034|UniProtKB=Q21738 | |||||||
| family | PTHR16148 | ||||||||
| NCBI | gene | 187613 | |||||||
| RefSeq | protein | NM_001392688.1 | |||||||
| SwissProt | UniProtAcc | Q21738 | |||||||
| TREEFAM | TREEFAM_ID | TF353394 | |||||||
| UniProt_GCRP | UniProtAcc | Q21738 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:52 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 16 Dec 2013 11:05:39 | WBPerson2970 | Name_change | CGC_name | paxt-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | paxt | ||||||||
| Allele (39) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00072584 | ||||||||
| 00072585 | |||||||||
| 00072586 | |||||||||
| 00072587 | |||||||||
| 00072588 | |||||||||
| 00072589 | |||||||||
| 00072590 | |||||||||
| 00072591 | |||||||||
| 00072592 | |||||||||
| 00072593 | |||||||||
| Contained_in_operon | CEOP1484 | ||||||||
| Ortholog (25) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in mRNA processing. Located in nucleolus and nucleoplasm. Is an ortholog of human CDKN2AIPNL (CDKN2A interacting protein N-terminal like). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R05D11.6 | |||||||
| Corresponding_CDS_history | R05D11.6:wp90 | ||||||||
| Corresponding_transcript | R05D11.6.1 | ||||||||
| Other_sequence | Oden_isotig14867 | ||||||||
| CBC08672_1 | |||||||||
| CR03744 | |||||||||
| CRC07806_1 | |||||||||
| CBC15920_1 | |||||||||
| Oden_isotig14866 | |||||||||
| CJC14146_1 | |||||||||
| CBC09619_1 | |||||||||
| Associated_feature | WBsf656642 | ||||||||
| WBsf218169 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00107634 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00107636 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076594 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004046 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051270 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008193 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107635 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034597 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11500 | ||||||||
| Expr1022767 | |||||||||
| Expr1034838 | |||||||||
| Expr1154972 | |||||||||
| Expr2014759 | |||||||||
| Expr2032993 | |||||||||
| Drives_construct | WBCnstr00018923 | ||||||||
| WBCnstr00018924 | |||||||||
| WBCnstr00018925 | |||||||||
| WBCnstr00018926 | |||||||||
| WBCnstr00022469 | |||||||||
| WBCnstr00030978 | |||||||||
| Construct_product | WBCnstr00006222 | ||||||||
| WBCnstr00006229 | |||||||||
| WBCnstr00018923 | |||||||||
| WBCnstr00018924 | |||||||||
| WBCnstr00018925 | |||||||||
| WBCnstr00018926 | |||||||||
| WBCnstr00030978 | |||||||||
| Antibody | WBAntibody00002504 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | I | Position | 2.98655 | |||||
| Positive | Positive_clone | R05D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031384 | ||||||||
| WBPaper00036306 | |||||||||
| WBPaper00044759 | |||||||||
| WBPaper00049099 | |||||||||
| WBPaper00050111 | |||||||||
| WBPaper00064203 | |||||||||
| WBPaper00064789 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
