WormBase Tree Display for Gene: WBGene00010551
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| WBGene00010551 | SMap | S_parent | Sequence | K04B12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | smg-8 | Paper_evidence | WBPaper00033152 | |||||
| Person_evidence | WBPerson5038 | ||||||||
| Sequence_name | K04B12.3 | ||||||||
| Molecular_name | K04B12.3a | ||||||||
| K04B12.3a.1 | |||||||||
| CE41824 | |||||||||
| K04B12.3b | |||||||||
| CE48521 | |||||||||
| K04B12.3c | |||||||||
| CE49007 | |||||||||
| K04B12.3b.1 | |||||||||
| K04B12.3c.1 | |||||||||
| Other_name | CELE_K04B12.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | smg-8 | ||||||||
| DB_info | Database | AceView | gene | 2O731 | |||||
| WormQTL | gene | WBGene00010551 | |||||||
| WormFlux | gene | WBGene00010551 | |||||||
| NDB | locus_tag | CELE_K04B12.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010551|UniProtKB=O62301 | |||||||
| family | PTHR13091 | ||||||||
| NCBI | gene | 175103 | |||||||
| RefSeq | protein | NM_001306631.3 | |||||||
| NM_064602.6 | |||||||||
| NM_001306630.5 | |||||||||
| SwissProt | UniProtAcc | O62301 | |||||||
| TrEMBL | UniProtAcc | U4PEH8 | |||||||
| U4PBA4 | |||||||||
| UniProt_GCRP | UniProtAcc | O62301 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 May 2009 14:00:22 | WBPerson9133 | Name_change | CGC_name | smg-8 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smg | ||||||||
| Allele (149) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00037616 | ||||||||
| 00037617 | |||||||||
| 00037618 | |||||||||
| 00037619 | |||||||||
| 00037620 | |||||||||
| 00037621 | |||||||||
| 00104967 | |||||||||
| 00117904 | |||||||||
| Ortholog (32) | |||||||||
| Structured_description | Automated_description | Involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Located in striated muscle dense body. Is an ortholog of human SMG8 (SMG8 nonsense mediated mRNA decay factor). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K04B12.3a | |||||||
| K04B12.3b | |||||||||
| K04B12.3c | |||||||||
| Corresponding_CDS_history | K04B12.3:wp128 | ||||||||
| K04B12.3:wp184 | |||||||||
| Corresponding_transcript | K04B12.3a.1 | ||||||||
| K04B12.3b.1 | |||||||||
| K04B12.3c.1 | |||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf644857 | ||||||||
| WBsf990719 | |||||||||
| WBsf990720 | |||||||||
| WBsf990721 | |||||||||
| WBsf1013845 | |||||||||
| WBsf1013846 | |||||||||
| WBsf222464 | |||||||||
| Experimental_info | RNAi_result (11) | ||||||||
| Expr_pattern | Expr9391 | ||||||||
| Expr1020171 | |||||||||
| Expr1034603 | |||||||||
| Expr1153586 | |||||||||
| Expr2015914 | |||||||||
| Expr2034147 | |||||||||
| Drives_construct | WBCnstr00031333 | ||||||||
| Construct_product | WBCnstr00013956 | ||||||||
| WBCnstr00031333 | |||||||||
| Antibody | WBAntibody00002207 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction | WBInteraction000237709 | ||||||||
| WBInteraction000437566 | |||||||||
| WBInteraction000500305 | |||||||||
| WBInteraction000562627 | |||||||||
| Map_info | Map | II | Position | 23.0039 | Error | 0.003177 | |||
| Positive | Positive_clone | K04B12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00033152 | ||||||||
| WBPaper00037111 | |||||||||
| WBPaper00038444 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041752 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060662 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
