WormBase Tree Display for Gene: WBGene00010534

WBGene00010534 SMap: S_parent: Sequence: K03D7
  Identity: Version: 2
    Name: CGC_name: fbxa-102 Person_evidence: WBPerson655
      Sequence_name: K03D7.7
      Molecular_name: K03D7.7
        K03D7.7.1
        CE51426
      Other_name: CELE_K03D7.7 Accession_evidence: NDB BX284605
      Public_name: fbxa-102
    DB_info: Database: AceView gene 5R966
        WormQTL gene WBGene00010534
        WormFlux gene WBGene00010534
        NDB locus_tag CELE_K03D7.7
        Panther gene CAEEL|WormBase=WBGene00010534|UniProtKB=O45652
          family PTHR23015
        NCBI gene 186946
        RefSeq protein NM_001322604.1
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc O45652
        UniProt_GCRP UniProtAcc O45652
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-102
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (168)
    RNASeq_FPKM (74)
    Ortholog: WBGene00072241 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
      WBGene00155797 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00071748 Caenorhabditis remanei From_analysis: Inparanoid_8
      Csp5_scaffold_00068.g3212 Caenorhabditis sinica From_analysis: WormBase-Compara
      chrV_pilon.g17472 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog (223)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Is affected by several genes including hpl-2; drh-3; and sin-3 based on tiling array and RNA-seq studies. Is affected by multi-walled carbon nanotube and resveratrol based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K03D7.7
    Corresponding_CDS_history: K03D7.7:wp252
    Corresponding_transcript: K03D7.7.1
    Associated_feature: WBsf1002679
      WBsf1021297
  Experimental_info: RNAi_result: WBRNAi00016543 Inferred_automatically: RNAi_primary
      WBRNAi00049827 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017260
      Expr1153541
    Microarray_results: SMD_K03D7.7
      SMD_K03D7.7:2
      177560_at
      Aff_K03D7.7
      GPL14144_K03D7.7_868-927_0.874_27_A
      GPL3518_CE16221
      GPL8304_CE_WBGene00010534_A
      GPL8673_K03D7_7P00522
      GPL8673_K03D7_7P00677
      GPL8673_K03D7_7P00832
    Expression_cluster (18)
  Map_info: Map: V Position: 12.9138 Error: 0.000604
    Positive: Positive_clone: K03D7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00012854
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene