WormBase Tree Display for Gene: WBGene00010374
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| WBGene00010374 | SMap | S_parent | Sequence | H08M01 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rga-5 | Person_evidence | WBPerson351 | |||||
| Sequence_name | H08M01.2 | ||||||||
| Molecular_name | H08M01.2b | ||||||||
| H08M01.2b.1 | |||||||||
| CE36176 | |||||||||
| H08M01.2c | |||||||||
| CE44621 | |||||||||
| H08M01.2d | |||||||||
| CE44576 | |||||||||
| H08M01.2c.1 | |||||||||
| H08M01.2d.1 | |||||||||
| Other_name | CELE_H08M01.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | rga-5 | ||||||||
| DB_info | Database | AceView | gene | 4O597 | |||||
| WormQTL | gene | WBGene00010374 | |||||||
| WormFlux | gene | WBGene00010374 | |||||||
| NDB | locus_tag | CELE_H08M01.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010374|UniProtKB=O45611 | |||||||
| family | PTHR46005 | ||||||||
| NCBI | gene | 178348 | |||||||
| RefSeq | protein | NM_001268831.3 | |||||||
| NM_001028086.6 | |||||||||
| NM_001268830.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF324451 | |||||||
| TrEMBL | UniProtAcc | O45611 | |||||||
| D3YT91 | |||||||||
| D3YT92 | |||||||||
| UniProt_GCRP | UniProtAcc | O45611 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 21 Jul 2009 14:43:34 | WBPerson9133 | Name_change | CGC_name | rga-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rga | ||||||||
| Allele (271) | |||||||||
| Strain | WBStrain00032442 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00007553 | ||||||||
| 00007554 | |||||||||
| 00007555 | |||||||||
| 00007556 | |||||||||
| 00007557 | |||||||||
| 00117798 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00000875 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Predicted to enable GTPase activator activity. Predicted to be involved in Rho protein signal transduction; regulation of axonogenesis; and regulation of cell size. Predicted to be located in cytosol. Is an ortholog of human ARHGAP35 (Rho GTPase activating protein 35) and ARHGAP5 (Rho GTPase activating protein 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | H08M01.2b | |||||||
| H08M01.2c | |||||||||
| H08M01.2d | |||||||||
| Corresponding_CDS_history | H08M01.2:wp92 | ||||||||
| H08M01.2:wp114 | |||||||||
| H08M01.2a:wp243 | |||||||||
| Corresponding_transcript | H08M01.2b.1 | ||||||||
| H08M01.2c.1 | |||||||||
| H08M01.2d.1 | |||||||||
| Other_sequence | CR00479 | ||||||||
| JI164609.1 | |||||||||
| CRC10596_1 | |||||||||
| JI164452.1 | |||||||||
| Associated_feature | WBsf660894 | ||||||||
| WBsf717202 | |||||||||
| WBsf998464 | |||||||||
| WBsf998465 | |||||||||
| WBsf1018574 | |||||||||
| WBsf229461 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Expr1021514 | ||||||||
| Expr1034530 | |||||||||
| Expr1153075 | |||||||||
| Expr2015317 | |||||||||
| Expr2033551 | |||||||||
| Construct_product | WBCnstr00022694 | ||||||||
| WBCnstr00022695 | |||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction | WBInteraction000033912 | ||||||||
| WBInteraction000035381 | |||||||||
| WBInteraction000038220 | |||||||||
| WBInteraction000372210 | |||||||||
| WBInteraction000534903 | |||||||||
| WBInteraction000534905 | |||||||||
| WBInteraction000534907 | |||||||||
| WBInteraction000534911 | |||||||||
| WBInteraction000554731 | |||||||||
| WBInteraction000578800 | |||||||||
| Map_info | Map | IV | Position | 10.8743 | |||||
| Positive | Positive_clone | H08M01 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049131 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
