WormBase Tree Display for Gene: WBGene00010304
expand all nodes | collapse all nodes | view schema
| WBGene00010304 | SMap | S_parent | Sequence | F59A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clpf-1 | Person_evidence | WBPerson5509 | |||||
| Sequence_name | F59A2.4 | ||||||||
| Molecular_name | F59A2.4a | ||||||||
| F59A2.4a.1 | |||||||||
| CE17941 | |||||||||
| F59A2.4b | |||||||||
| CE39740 | |||||||||
| F59A2.4b.1 | |||||||||
| Other_name | CELE_F59A2.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | clpf-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Nov 2008 17:10:59 | WBPerson2970 | Name_change | CGC_name | clpf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clpf | ||||||||
| Allele (50) | |||||||||
| Strain | WBStrain00037800 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP3108 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00010709 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity. Predicted to be involved in mRNA polyadenylation and tRNA splicing, via endonucleolytic cleavage and ligation. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 10. Is an ortholog of human CLP1 (cleavage factor polyribonucleotide kinase subunit 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060279 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:16999) | ||||
| Molecular_info | Corresponding_CDS | F59A2.4a | |||||||
| F59A2.4b | |||||||||
| Corresponding_transcript | F59A2.4a.1 | ||||||||
| F59A2.4b.1 | |||||||||
| Other_sequence (31) | |||||||||
| Associated_feature | WBsf645023 | ||||||||
| WBsf224608 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr1019922 | ||||||||
| Expr1034495 | |||||||||
| Expr1152837 | |||||||||
| Expr2010249 | |||||||||
| Expr2028491 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (98) | |||||||||
| Interaction (162) | |||||||||
| Map_info | Map | III | Position | -7.00575 | Error | 0.012885 | |||
| Positive | Positive_clone | F59A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00032289 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045264 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
