WormBase Tree Display for Gene: WBGene00010212
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WBGene00010212 | SMap | S_parent | Sequence | F57G4 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-192 | Person_evidence | WBPerson655 | |||||
Sequence_name | F57G4.8 | ||||||||
Molecular_name | F57G4.8 | ||||||||
F57G4.8.1 | |||||||||
CE40854 | |||||||||
Other_name | CELE_F57G4.8 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fbxa-192 | ||||||||
DB_info | Database | AceView | gene | 5S128 | |||||
WormQTL | gene | WBGene00010212 | |||||||
WormFlux | gene | WBGene00010212 | |||||||
NDB | locus_tag | CELE_F57G4.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00010212|UniProtKB=Q9XUX2 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 186462 | |||||||
RefSeq | protein | NM_075064.3 | |||||||
TREEFAM | TREEFAM_ID | TF322954 | |||||||
TrEMBL | UniProtAcc | Q9XUX2 | |||||||
UniProt_GCRP | UniProtAcc | Q9XUX2 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Mar 2007 11:55:19 | WBPerson2970 | Name_change | CGC_name | fbxa-192 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (153) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP5460 | ||||||||
Ortholog (27) | |||||||||
Paralog (222) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in germ line; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eight chemicals including manganese chloride; Sirolimus; and Rifampin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F57G4.8 | |||||||
Corresponding_CDS_history | F57G4.8:wp173 | ||||||||
Corresponding_transcript | F57G4.8.1 | ||||||||
Associated_feature | WBsf669821 | ||||||||
WBsf669822 | |||||||||
WBsf669823 | |||||||||
WBsf1002702 | |||||||||
WBsf1002703 | |||||||||
WBsf1002704 | |||||||||
WBsf1021316 | |||||||||
WBsf1021317 | |||||||||
WBsf1021318 | |||||||||
Experimental_info | RNAi_result | WBRNAi00048897 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00097101 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1022407 | ||||||||
Expr1034454 | |||||||||
Expr1152638 | |||||||||
Expr2011509 | |||||||||
Expr2029746 | |||||||||
Drives_construct | WBCnstr00031581 | ||||||||
Construct_product | WBCnstr00031581 | ||||||||
Microarray_results (15) | |||||||||
Expression_cluster (216) | |||||||||
Interaction (26) | |||||||||
Map_info | Map | V | Position | 12.9436 | Error | 0.002683 | |||
Positive | Positive_clone | F57G4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
WBPaper00028483 | |||||||||
WBPaper00044753 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |