WormBase Tree Display for Gene: WBGene00010202
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| WBGene00010202 | SMap | S_parent | Sequence | F57E7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spig-6 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F57E7.1 | ||||||||
| Molecular_name | F57E7.1a | ||||||||
| F57E7.1a.1 | |||||||||
| CE18763 | |||||||||
| F57E7.1b | |||||||||
| CE47804 | |||||||||
| F57E7.1b.1 | |||||||||
| Other_name | CELE_F57E7.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | spig-6 | ||||||||
| DB_info | Database | AceView | gene | 5Q953 | |||||
| WormQTL | gene | WBGene00010202 | |||||||
| WormFlux | gene | WBGene00010202 | |||||||
| NDB | locus_tag | CELE_F57E7.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010202|UniProtKB=Q9XXT3 | |||||||
| family | PTHR33272 | ||||||||
| NCBI | gene | 186450 | |||||||
| RefSeq | protein | NM_074768.3 | |||||||
| NM_001276978.1 | |||||||||
| TrEMBL | UniProtAcc | J7S151 | |||||||
| Q9XXT3 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9XXT3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Jan 2023 20:48:33 | WBPerson51134 | Name_change | CGC_name | spig-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spig | ||||||||
| Allele (35) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (44) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Automated_description | Enriched in amphid sheath cell; muscle cell; and neurons based on RNA-seq and microarray studies. Is affected by several genes including skn-1; sir-2.1; and clk-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including methylmercuric chloride; multi-walled carbon nanotube; and cholesterol based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function (DUF4473) and Protein of unknown function DUF4473. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F57E7.1a | |||||||
| F57E7.1b | |||||||||
| Corresponding_transcript | F57E7.1a.1 | ||||||||
| F57E7.1b.1 | |||||||||
| Associated_feature | WBsf233115 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00048872 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015893 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019260 | ||||||||
| Expr1152619 | |||||||||
| Expr2004351 | |||||||||
| Expr2022576 | |||||||||
| Drives_construct | WBCnstr00031585 | ||||||||
| Construct_product | WBCnstr00031585 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (68) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | V | Position | 10.1228 | |||||
| Positive | Positive_clone | F57E7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
