WormBase Tree Display for Gene: WBGene00009834
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| WBGene00009834 | SMap | S_parent | Sequence | F47H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lsy-27 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F47H4.1 | ||||||||
| Molecular_name | F47H4.1a | ||||||||
| F47H4.1a.1 | |||||||||
| CE16062 | |||||||||
| F47H4.1b | |||||||||
| CE47185 | |||||||||
| F47H4.1b.1 | |||||||||
| Other_name | CELE_F47H4.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | lsy-27 | ||||||||
| DB_info | Database | AceView | gene | 5R830 | |||||
| WormQTL | gene | WBGene00009834 | |||||||
| WormFlux | gene | WBGene00009834 | |||||||
| NDB | locus_tag | CELE_F47H4.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009834|UniProtKB=O45526 | |||||||
| family | PTHR24408 | ||||||||
| NCBI | gene | 180149 | |||||||
| RefSeq | protein | NM_001269810.2 | |||||||
| NM_001269811.3 | |||||||||
| SwissProt | UniProtAcc | O45526 | |||||||
| UniProt_GCRP | UniProtAcc | O45526 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Feb 2010 14:17:26 | WBPerson2970 | Name_change | CGC_name | lsy-27 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lsy | ||||||||
| Allele (102) | |||||||||
| Strain | WBStrain00035339 | ||||||||
| WBStrain00035340 | |||||||||
| WBStrain00029578 | |||||||||
| WBStrain00029674 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00034723 | ||||||||
| 00034724 | |||||||||
| 00034725 | |||||||||
| 00034726 | |||||||||
| 00034727 | |||||||||
| 00034728 | |||||||||
| 00034729 | |||||||||
| 00034730 | |||||||||
| Ortholog (66) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | lsy-27 encodes a nematode specific, fast evolving family of C2H2 zinc finger transcription factor; lsy controls the left/right asymmetric expression of gcy genes; lsy-27 acts during the initiation, but not maintenance phase of ASE laterality control, to assist in the initiation of lim-6 expression; lsy cooperates with ASEL-expressed die-1 to trigger lim-6 expression in the embryo; LSY-27 is broadly expressed in the embryo from one cell to comma stage, in ASE neurons at comma stage. | Paper_evidence | WBPaper00038390 | |||||
| Curator_confirmed | WBPerson12884 | ||||||||
| Date_last_updated | 11 Jul 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in neuron differentiation and regulation of DNA-templated transcription. Predicted to be located in nucleus. Expressed in ASE; embryonic cell; head; somatic nervous system; and tail neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F47H4.1a | |||||||
| F47H4.1b | |||||||||
| Corresponding_transcript | F47H4.1a.1 | ||||||||
| F47H4.1b.1 | |||||||||
| Associated_feature | WBsf653510 | ||||||||
| WBsf978928 | |||||||||
| WBsf235170 | |||||||||
| WBsf235171 | |||||||||
| Transcription_factor | WBTranscriptionFactor000343 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00062256 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00047698 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032461 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015216 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115846 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (15) | |||||||||
| Drives_construct | WBCnstr00001149 | ||||||||
| WBCnstr00001150 | |||||||||
| WBCnstr00012719 | |||||||||
| WBCnstr00014676 | |||||||||
| WBCnstr00014677 | |||||||||
| WBCnstr00015274 | |||||||||
| WBCnstr00015275 | |||||||||
| WBCnstr00031883 | |||||||||
| Construct_product | WBCnstr00014676 | ||||||||
| WBCnstr00014677 | |||||||||
| WBCnstr00016797 | |||||||||
| WBCnstr00021748 | |||||||||
| WBCnstr00031883 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (178) | |||||||||
| Interaction (122) | |||||||||
| Map_info | Map | V | Position | 12.8865 | Error | 0.001359 | |||
| Positive | Positive_clone | F47H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00030973 | |||||||||
| WBPaper00038390 | |||||||||
| WBPaper00039230 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
