WormBase Tree Display for Gene: WBGene00009643
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| WBGene00009643 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F42G4.6 | |||||||
| Molecular_name | F42G4.6 | ||||||||
| F42G4.6.1 | |||||||||
| CE20776 | |||||||||
| Other_name | CELE_F42G4.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | F42G4.6 | ||||||||
| DB_info | Database | AceView | gene | 2N371 | |||||
| WormQTL | gene | WBGene00009643 | |||||||
| WormFlux | gene | WBGene00009643 | |||||||
| NDB | locus_tag | CELE_F42G4.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009643|UniProtKB=G5EFT3 | |||||||
| family | PTHR31128 | ||||||||
| NCBI | gene | 174952 | |||||||
| RefSeq | protein | NM_001383977.2 | |||||||
| TREEFAM | TREEFAM_ID | TF315835 | |||||||
| TrEMBL | UniProtAcc | G5EFT3 | |||||||
| UniProt_GCRP | UniProtAcc | G5EFT3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (13) | |||||||||
| Strain | WBStrain00032416 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00009321 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00044684 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00009705 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015034 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013590 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020377 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015820 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | F42G4.6 encodes a nematode-specific sperm protein; F42G4.6 has no obvious non-nematode homologs, but does have a putative central coiled-coil domain, and is is paralogous to four other C. elegans proteins (B0207.11, F42G4.6, F44F4.10, T08G11.2, and Y81G3A.1); F42G4.6(RNAi) animals exhibit aldicarb resistance; F42G4.6 expression is enriched in spermatogenesis. | Paper_evidence | WBPaper00006390 | |||||
| WBPaper00026667 | |||||||||
| WBPaper00029335 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 23 Jul 2007 00:00:00 | ||||||||
| Automated_description | Enriched in germ line; intestine; and in male based on proteomic and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including mianserin; D-glucose; and allantoin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F42G4.6 | |||||||
| Corresponding_transcript | F42G4.6.1 | ||||||||
| Associated_feature | WBsf990320 | ||||||||
| WBsf990321 | |||||||||
| WBsf1013561 | |||||||||
| WBsf222323 | |||||||||
| WBsf222324 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00021522 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00060944 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000691 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047120 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00060942 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00060941 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014840 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00060943 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023193 | ||||||||
| Expr1150988 | |||||||||
| Expr2003649 | |||||||||
| Expr2021867 | |||||||||
| Drives_construct | WBCnstr00032029 | ||||||||
| Construct_product | WBCnstr00032029 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (125) | |||||||||
| Map_info | Positive | Positive_clone | F42G4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | 14.061 | |||||||
| Method | Gene |
