WormBase Tree Display for Gene: WBGene00009639
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| WBGene00009639 | SMap | S_parent | Sequence | F42F12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nspc-15 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F42F12.8 | ||||||||
| Molecular_name | F42F12.8 | ||||||||
| F42F12.8.1 | |||||||||
| CE31940 | |||||||||
| Other_name | CELE_F42F12.8 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | nspc-15 | ||||||||
| DB_info | Database | AceView | gene | XM979 | |||||
| WormQTL | gene | WBGene00009639 | |||||||
| WormFlux | gene | WBGene00009639 | |||||||
| NDB | locus_tag | CELE_F42F12.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009639|UniProtKB=G5EC48 | |||||||
| family | PTHR31330 | ||||||||
| NCBI | gene | 181396 | |||||||
| RefSeq | protein | NM_077673.9 | |||||||
| TREEFAM | TREEFAM_ID | TF318876 | |||||||
| TrEMBL | UniProtAcc | G5EC48 | |||||||
| UniProt_GCRP | UniProtAcc | G5EC48 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 May 2005 14:07:22 | WBPerson2970 | Name_change | CGC_name | nspc-15 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nspc | ||||||||
| Allele | WBVar01499887 | ||||||||
| WBVar01499888 | |||||||||
| WBVar01499710 | |||||||||
| WBVar02123784 | |||||||||
| WBVar01487811 | |||||||||
| WBVar02121070 | |||||||||
| WBVar02123865 | |||||||||
| WBVar02122059 | |||||||||
| WBVar01498960 | |||||||||
| WBVar01500067 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (260) | |||||||||
| Paralog (17) | |||||||||
| Structured_description | Automated_description | Enriched in excretory gland cell and neurons based on single-cell RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by eight chemicals including mianserin; fluvastatin; and cholesterol based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F42F12.8 | |||||||
| Corresponding_transcript | F42F12.8.1 | ||||||||
| Associated_feature | WBsf236480 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00047106 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014829 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1150974 | ||||||||
| Drives_construct | WBCnstr00032033 | ||||||||
| Construct_product | WBCnstr00032033 | ||||||||
| Microarray_results | SMD_F42F12.7 | ||||||||
| 172324_x_at | |||||||||
| 172334_x_at | |||||||||
| 172357_x_at | |||||||||
| 172713_x_at | |||||||||
| 172715_x_at | |||||||||
| 172716_x_at | |||||||||
| 194245_x_at | |||||||||
| Aff_F42F12.7 | |||||||||
| Expression_cluster (94) | |||||||||
| Map_info | Map | X | Position | 7.03305 | |||||
| Positive | Positive_clone | F42F12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00064841 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
