WormBase Tree Display for Gene: WBGene00009600
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| WBGene00009600 | SMap | S_parent | Sequence | F40G12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F40G12.5 | |||||||
| Molecular_name | F40G12.5 | ||||||||
| F40G12.5.1 | |||||||||
| CE10184 | |||||||||
| Other_name | CELE_F40G12.5 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | F40G12.5 | ||||||||
| DB_info | Database | AceView | gene | 5O750 | |||||
| WormQTL | gene | WBGene00009600 | |||||||
| WormFlux | gene | WBGene00009600 | |||||||
| NDB | locus_tag | CELE_F40G12.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009600|UniProtKB=Q20246 | |||||||
| family | PTHR31897 | ||||||||
| NCBI | gene | 185565 | |||||||
| RefSeq | protein | NM_074131.3 | |||||||
| TREEFAM | TREEFAM_ID | TF315866 | |||||||
| TrEMBL | UniProtAcc | Q20246 | |||||||
| UniProt_GCRP | UniProtAcc | Q20246 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (26) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00127818 | Caenorhabditis japonica | From_analysis | TreeFam | |||||
| WBGene00027331 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
| OrthoMCL | |||||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00056956 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00152918 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| TreeFam | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| Csp11.Scaffold630.g19949 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_02138.g25052 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| GCK72_020301 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| chrV_pilon.g16470 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (27) | |||||||||
| Structured_description | Automated_description | Enriched in G2; MSaaaaapa; W cell; amphid sheath cell; and neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including Rifampin; indole; and 4-bromodiphenyl ether based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF19 and Domain of unknown function (DUF19). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40G12.5 | |||||||
| Corresponding_transcript | F40G12.5.1 | ||||||||
| Associated_feature | WBsf234924 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00032049 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00046898 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014681 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011299 | ||||||||
| Expr1150765 | |||||||||
| Expr2003547 | |||||||||
| Expr2021764 | |||||||||
| Drives_construct | WBCnstr00032069 | ||||||||
| Construct_product | WBCnstr00032069 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (136) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Positive | Positive_clone | F40G12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 6.21733 | |||||||
| Method | Gene |
