WormBase Tree Display for Gene: WBGene00009579
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| WBGene00009579 | SMap | S_parent | Sequence | F40F8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | arrd-6 | Person_evidence | WBPerson261 | |||||
| WBPerson522 | |||||||||
| Sequence_name | F40F8.8 | ||||||||
| Molecular_name | F40F8.8a | ||||||||
| F40F8.8a.1 | |||||||||
| CE05847 | |||||||||
| F40F8.8b | |||||||||
| CE44356 | |||||||||
| F40F8.8a.2 | |||||||||
| F40F8.8a.3 | |||||||||
| F40F8.8b.1 | |||||||||
| Other_name | CELE_F40F8.8 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | arrd-6 | ||||||||
| DB_info | Database | AceView | gene | 2L443 | |||||
| WormQTL | gene | WBGene00009579 | |||||||
| WormFlux | gene | WBGene00009579 | |||||||
| NDB | locus_tag | CELE_F40F8.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009579|UniProtKB=D1MN74 | |||||||
| family | PTHR11188 | ||||||||
| NCBI | gene | 185541 | |||||||
| RefSeq | protein | NM_001267361.3 | |||||||
| NM_001267362.2 | |||||||||
| TrEMBL | UniProtAcc | Q20232 | |||||||
| D1MN74 | |||||||||
| UniProt_GCRP | UniProtAcc | D1MN74 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Jul 2010 16:45:41 | WBPerson2970 | Name_change | CGC_name | arrd-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | arrd | ||||||||
| Allele (119) | |||||||||
| Strain | WBStrain00051464 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00007276 | ||||||||
| 00007277 | |||||||||
| Ortholog (37) | |||||||||
| Paralog (29) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in protein transport. Predicted to be located in cytoplasm. Expressed in amphid process; head ganglion; nerve ring; tail neurons; and ventral nerve cord. Is an ortholog of human TXNIP (thioredoxin interacting protein). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F40F8.8a | |||||||
| F40F8.8b | |||||||||
| Corresponding_transcript | F40F8.8a.1 | ||||||||
| F40F8.8a.2 | |||||||||
| F40F8.8a.3 | |||||||||
| F40F8.8b.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046878 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00014666 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032038 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr436 | ||||||||
| Expr1016621 | |||||||||
| Expr1034191 | |||||||||
| Expr1150746 | |||||||||
| Expr2009429 | |||||||||
| Expr2027666 | |||||||||
| Drives_construct | WBCnstr00032087 | ||||||||
| Construct_product | WBCnstr00032087 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction | WBInteraction000030014 | ||||||||
| WBInteraction000032125 | |||||||||
| WBInteraction000339688 | |||||||||
| WBInteraction000508194 | |||||||||
| WBInteraction000579209 | |||||||||
| WBInteraction000579213 | |||||||||
| Map_info | Map | II | Position | 3.3253 | Error | 0.001271 | |||
| Positive | Positive_clone | F40F8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064595 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
