WormBase Tree Display for Gene: WBGene00009297
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| WBGene00009297 | SMap | S_parent | Sequence | F31E9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sdz-16 | Paper_evidence | WBPaper00024645 | |||||
| Person_evidence | WBPerson374 | ||||||||
| Sequence_name | F31E9.4 | ||||||||
| Molecular_name | F31E9.4 | ||||||||
| F31E9.4.1 | |||||||||
| CE15938 | |||||||||
| Other_name | CELE_F31E9.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | sdz-16 | ||||||||
| DB_info | Database | AceView | gene | 5R806 | |||||
| WormQTL | gene | WBGene00009297 | |||||||
| WormFlux | gene | WBGene00009297 | |||||||
| NDB | locus_tag | CELE_F31E9.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00009297|UniProtKB=O45427 | |||||||
| family | PTHR21503 | ||||||||
| NCBI | gene | 180147 | |||||||
| RefSeq | protein | NM_074985.7 | |||||||
| TREEFAM | TREEFAM_ID | TF322473 | |||||||
| TrEMBL | UniProtAcc | O45427 | |||||||
| UniProt_GCRP | UniProtAcc | O45427 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 19 Aug 2005 17:08:06 | WBPerson2970 | Name_change | CGC_name | sdz-16 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sdz | ||||||||
| Allele (149) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (43) | |||||||||
| Paralog (54) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in g1; hypodermis; interneuron; and muscle cell based on tiling array and single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and sir-2.1 based on RNA-seq and microarray studies. Is affected by sixteen chemicals including hydrogen sulfide; methylmercuric chloride; and rotenone based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: F-box associated. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F31E9.4 | |||||||
| Corresponding_transcript | F31E9.4.1 | ||||||||
| Associated_feature | WBsf653509 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00046034 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr1034060 | ||||||||
| Expr1149928 | |||||||||
| Expr2015675 | |||||||||
| Expr2033908 | |||||||||
| Drives_construct | WBCnstr00032305 | ||||||||
| Construct_product | WBCnstr00032305 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (126) | |||||||||
| Interaction (54) | |||||||||
| Map_info | Map | V | Position | 12.8597 | Error | 0.000723 | |||
| Positive | Positive_clone | F31E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
