WormBase Tree Display for Gene: WBGene00009296

WBGene00009296 SMap: S_parent: Sequence: F31E9
  Identity: Version: 1
    Name: Sequence_name: F31E9.3
      Molecular_name: F31E9.3
        F31E9.3.1
        CE40954
      Other_name: CELE_F31E9.3 Accession_evidence: NDB BX284605
      Public_name: F31E9.3
    DB_info: Database: AceView gene 5R803
        WormQTL gene WBGene00009296
        WormFlux gene WBGene00009296
        NDB locus_tag CELE_F31E9.3
        Panther gene CAEEL|WormBase=WBGene00009296|UniProtKB=O45428
          family PTHR23015
        NCBI gene 185160
        RefSeq protein NM_074984.4
        TREEFAM TREEFAM_ID TF322031
        TrEMBL UniProtAcc O45428
        UniProt_GCRP UniProtAcc O45428
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (178)
    RNASeq_FPKM (74)
    Ortholog: WBGene00122765 Caenorhabditis japonica From_analysis: Inparanoid_8
      CSP26.g1431 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g8512 Caenorhabditis becei From_analysis: WormBase-Compara
      FL83_20130 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_021078 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrV_pilon.g17424 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00068304 Caenorhabditis remanei From_analysis: WormBase-Compara
    Paralog (223)
    Structured_description: Concise_description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in coelomocyte; intestine; neurons; and rectal gland cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by ten chemicals including multi-walled carbon nanotube; Psoralens; and allantoin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F31E9.3
    Corresponding_CDS_history: F31E9.3:wp175
    Corresponding_transcript: F31E9.3.1
    Associated_feature: WBsf662178
      WBsf1002636
      WBsf1002637
      WBsf1002638
      WBsf1021258
      WBsf233140
  Experimental_info: RNAi_result: WBRNAi00014159 Inferred_automatically: RNAi_primary
      WBRNAi00046033 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024984
      Expr1149927
      Expr2003188
      Expr2021401
    Drives_construct: WBCnstr00032306
    Construct_product: WBCnstr00032306
    Microarray_results: SMD_F31E9.3
      A_12_P150225
      GPL14144_F31E9.3_954-1013_0.965_1_A
      GPL19516_CGZ0019134
      GPL21109_F31E9.3
      GPL3518_CE15937
      GPL8304_CE_WBGene00009296_A
      GPL8673_F31E9_3P00728
      GPL8673_F31E9_3P01103
    Expression_cluster (71)
  Map_info: Positive: Positive_clone: F31E9 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 12.8587
  Reference: WBPaper00012854
  Method: Gene