WormBase Tree Display for Gene: WBGene00009004
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WBGene00009004 | SMap | S_parent | Sequence | F21C3 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pfd | ||||||
Allele (15) | |||||||
Strain | WBStrain00027642 | ||||||
WBStrain00037185 | |||||||
WBStrain00037512 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (11) | |||||||
Contained_in_operon | CEOP1384 | ||||||
Ortholog (35) | |||||||
Structured_description | Concise_description | pfd-6 encodes a putative prefoldin 6 subunit, orthologous to human PFDN6 (OMIM:605660), required for normal microtubule growth and distal tip cell migration; PFD-6 is expressed cytoplasmically in most, if not all, tissues, including the germline; in mass RNAi assays, PFD-6 is required for normal mitotic spindle position, embryonic and larval viability, fertility, body shape, vulval development, and locomotion, and for normally rapid growth; pfd-6(RNAi) embryos show a reduced microtubule growth rate. | Paper_evidence | WBPaper00004402 | |||
WBPaper00006395 | |||||||
WBPaper00025054 | |||||||
WBPaper00028783 | |||||||
WBPaper00031309 | |||||||
WBPaper00031362 | |||||||
WBPaper00031363 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 14 Jan 2008 00:00:00 | ||||||
Automated_description | Predicted to enable protein-folding chaperone binding activity. Predicted to be involved in chaperone-mediated protein complex assembly and protein folding. Located in cytoplasm. Expressed in body wall musculature; hypodermal cell; intestinal cell; and non-striated muscle. Is an ortholog of human PFDN6 (prefoldin subunit 6). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F21C3.5 | |||||
Corresponding_transcript | F21C3.5.1 | ||||||
Other_sequence (31) | |||||||
Associated_feature | WBsf649304 | ||||||
WBsf664429 | |||||||
WBsf219731 | |||||||
WBsf219732 | |||||||
Experimental_info | RNAi_result (11) | ||||||
Expr_pattern | Expr7841 | ||||||
Expr14586 | |||||||
Expr1020376 | |||||||
Expr1033920 | |||||||
Expr1149123 | |||||||
Expr2014846 | |||||||
Expr2033081 | |||||||
Drives_construct | WBCnstr00001361 | ||||||
WBCnstr00032533 | |||||||
WBCnstr00041173 | |||||||
Construct_product (2) | |||||||
Regulate_expr_cluster | WBPaper00055827:pfd-6(gk493446)_downregulated | ||||||
WBPaper00055827:pfd-6(gk493446)_upregulated | |||||||
Antibody | WBAntibody00001342 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (133) | |||||||
Interaction (152) | |||||||
Map_info | Map | I | Position | 1.87364 | Error | 0.000337 | |
Positive | Positive_clone | F21C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031309 | ||||||
WBPaper00038491 | |||||||
WBPaper00051688 | |||||||
WBPaper00055090 | |||||||
WBPaper00055827 | |||||||
WBPaper00057394 | |||||||
WBPaper00064339 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |