WormBase Tree Display for Gene: WBGene00008919
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| WBGene00008919 | SMap | S_parent | Sequence | F17C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | vps-36 | Person_evidence | WBPerson3188 | |||||
| Sequence_name | F17C11.8 | ||||||||
| Molecular_name | F17C11.8 | ||||||||
| F17C11.8.1 | |||||||||
| CE38502 | |||||||||
| Other_name | tag-318 | ||||||||
| CELE_F17C11.8 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | vps-36 | ||||||||
| DB_info | Database | AceView | gene | 5L440 | |||||
| WormQTL | gene | WBGene00008919 | |||||||
| WormFlux | gene | WBGene00008919 | |||||||
| NDB | locus_tag | CELE_F17C11.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008919|UniProtKB=Q19519 | |||||||
| family | PTHR13128 | ||||||||
| NCBI | gene | 179520 | |||||||
| RefSeq | protein | NM_073397.8 | |||||||
| TREEFAM | TREEFAM_ID | TF314770 | |||||||
| TrEMBL | UniProtAcc | Q19519 | |||||||
| UniProt_GCRP | UniProtAcc | Q19519 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Apr 2005 11:55:18 | WBPerson2970 | Name_change | CGC_name | tag-318 | ||||
| 3 | 26 Feb 2009 16:18:19 | WBPerson9133 | Name_change | CGC_name | vps-36 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00036194 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP5268 | ||||||||
| Ortholog (36) | |||||||||
| Structured_description | Automated_description | Predicted to enable ubiquitin binding activity. Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be located in late endosome membrane. Predicted to be part of ESCRT II complex. Expressed in pharyngeal muscle cell. Is an ortholog of human VPS36 (vacuolar protein sorting 36 homolog). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F17C11.8 | |||||||
| Corresponding_CDS_history | F17C11.8:wp142 | ||||||||
| Corresponding_transcript | F17C11.8.1 | ||||||||
| Other_sequence (39) | |||||||||
| Associated_feature | WBsf653051 | ||||||||
| WBsf669347 | |||||||||
| WBsf234474 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Chronogram1236 | ||||||||
| Expr5781 | |||||||||
| Expr12775 | |||||||||
| Expr12779 | |||||||||
| Expr1026822 | |||||||||
| Expr1033881 | |||||||||
| Expr1148846 | |||||||||
| Expr2018027 | |||||||||
| Expr2036164 | |||||||||
| Drives_construct | WBCnstr00003541 | ||||||||
| WBCnstr00022877 | |||||||||
| WBCnstr00037862 | |||||||||
| Construct_product | WBCnstr00022877 | ||||||||
| WBCnstr00037862 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (82) | |||||||||
| Interaction (59) | |||||||||
| Map_info | Map | V | Position | 2.84377 | |||||
| Positive | Positive_clone | F17C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5210 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026641 | ||||||||
| WBPaper00031212 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038585 | |||||||||
| WBPaper00039823 | |||||||||
| WBPaper00040674 | |||||||||
| WBPaper00043249 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056974 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (2.85963) | |||||||||
| [220730 skd] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (2.84) | |||||||||
| Method | Gene |
