WormBase Tree Display for Gene: WBGene00008909
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| WBGene00008909 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-110 | Person_evidence | WBPerson2531 | |||||
| Sequence_name | F17B5.5 | ||||||||
| Molecular_name | F17B5.5 | ||||||||
| F17B5.5.1 | |||||||||
| CE18607 | |||||||||
| Other_name | CELE_F17B5.5 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | clec-110 | ||||||||
| DB_info | Database | AceView | gene | 1N797 | |||||
| WormQTL | gene | WBGene00008909 | |||||||
| WormFlux | gene | WBGene00008909 | |||||||
| NDB | locus_tag | CELE_F17B5.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008909|UniProtKB=G5ECM8 | |||||||
| family | PTHR47517 | ||||||||
| NCBI | gene | 184613 | |||||||
| RefSeq | protein | NM_060911.1 | |||||||
| TREEFAM | TREEFAM_ID | TF315870 | |||||||
| TrEMBL | UniProtAcc | G5ECM8 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECM8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 09 Oct 2007 15:40:27 | WBPerson2970 | Name_change | CGC_name | clec-110 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (41) | |||||||||
| Paralog (127) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including eat-2; clk-1; and rrf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by seven chemicals including iron oxide nanoparticle; Rifampin; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily and C-type lectin fold. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F17B5.5 | |||||||
| Corresponding_transcript | F17B5.5.1 | ||||||||
| Associated_feature | WBsf657010 | ||||||||
| WBsf657011 | |||||||||
| WBsf218692 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00013455 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031064 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112621 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044869 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011612 | ||||||||
| Expr1148830 | |||||||||
| Expr2010055 | |||||||||
| Expr2028296 | |||||||||
| Drives_construct | WBCnstr00032603 | ||||||||
| Construct_product | WBCnstr00032603 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (34) | |||||||||
| SAGE_tag | SAGE:gaccgatggt | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:atgaattgtt | Strand | Antisense | |||||||
| SAGE:taaatgtgtt | Strand | Antisense | |||||||
| Interaction (34) | |||||||||
| Map_info | Map | I | Position | 17.2566 | Error | 0.006441 | |||
| Positive | Positive_clone | F17B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
