WormBase Tree Display for Gene: WBGene00008612
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| WBGene00008612 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-103 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F09C3.4 | ||||||||
| Molecular_name | F09C3.4 | ||||||||
| F09C3.4.1 | |||||||||
| CE45717 | |||||||||
| Other_name | CELE_F09C3.4 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | fbxa-103 | ||||||||
| DB_info | Database | AceView | gene | 1O876 | |||||
| WormQTL | gene | WBGene00008612 | |||||||
| WormFlux | gene | WBGene00008612 | |||||||
| NDB | locus_tag | CELE_F09C3.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008612|UniProtKB=G5EDX6 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 184228 | |||||||
| RefSeq | protein | NM_061095.4 | |||||||
| TREEFAM | TREEFAM_ID | TF322006 | |||||||
| TrEMBL | UniProtAcc | G5EDX6 | |||||||
| UniProt_GCRP | UniProtAcc | G5EDX6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-103 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele (142) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00156864 | Caenorhabditis brenneri | From_analysis | OMA | |||||
| WBGene00155797 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| WBGene00072241 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| WBGene00071748 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | ||||||
| CSP40.g9781 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| CSP40.g9782 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| chrI_pilon.g2889 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog (223) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including ABalppappa; ABalppppaa; ABalpppppa; CAN; and amphid neurons based on single-cell RNA-seq studies. Is affected by several genes including daf-2; eat-2; and sir-2.1 based on microarray and RNA-seq studies. Is affected by eleven chemicals including methylmercuric chloride; Alovudine; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F09C3.4 | |||||||
| Corresponding_CDS_history | F09C3.4:wp223 | ||||||||
| Corresponding_transcript | F09C3.4.1 | ||||||||
| Other_sequence | Dviv_isotig29788 | ||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003348 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044091 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030694 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110637 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027754 | ||||||||
| Expr1033754 | |||||||||
| Expr1148059 | |||||||||
| Expr2011450 | |||||||||
| Expr2029688 | |||||||||
| Drives_construct | WBCnstr00032829 | ||||||||
| Construct_product | WBCnstr00032829 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000219961 | ||||||||
| WBInteraction000258610 | |||||||||
| WBInteraction000307267 | |||||||||
| WBInteraction000504789 | |||||||||
| WBInteraction000504790 | |||||||||
| Map_info | Map | I | Position | 24.2703 | Error | 0.018326 | |||
| Positive | Positive_clone | F09C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
