WormBase Tree Display for Gene: WBGene00008596
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| WBGene00008596 | SMap | S_parent | Sequence | F08H9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-54 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F08H9.8 | ||||||||
| Molecular_name | F08H9.8 | ||||||||
| F08H9.8.1 | |||||||||
| CE35853 | |||||||||
| Other_name | CELE_F08H9.8 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | clec-54 | ||||||||
| DB_info | Database | AceView | gene | 5O957 | |||||
| WormQTL | gene | WBGene00008596 | |||||||
| WormFlux | gene | WBGene00008596 | |||||||
| NDB | locus_tag | CELE_F08H9.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008596|UniProtKB=Q19226 | |||||||
| family | PTHR47761 | ||||||||
| NCBI | gene | 184217 | |||||||
| RefSeq | protein | NM_074189.7 | |||||||
| TrEMBL | UniProtAcc | Q19226 | |||||||
| UniProt_GCRP | UniProtAcc | Q19226 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Apr 2005 13:53:46 | WBPerson2970 | Name_change | CGC_name | clec-54 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele (40) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (35) | |||||||||
| Paralog (51) | |||||||||
| Structured_description | Automated_description | Enriched in anterior arcade cell and intestine based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including hydrogen sulfide; rotenone; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: C-type lectin fold; Spermadhesin, CUB domain superfamily; Lectin C-type domain; CUB domain; C-type lectin-like/link domain superfamily; and C-type lectin-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F08H9.8 | |||||||
| Corresponding_CDS_history | F08H9.8:wp111 | ||||||||
| Corresponding_transcript | F08H9.8.1 | ||||||||
| Other_sequence | CBC08718_1 | ||||||||
| CRC01647_1 | |||||||||
| CR12532 | |||||||||
| Associated_feature | WBsf232931 | ||||||||
| WBsf232932 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012940 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030680 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044066 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1010392 | ||||||||
| Expr1148032 | |||||||||
| Expr2010187 | |||||||||
| Expr2028429 | |||||||||
| Drives_construct | WBCnstr00032843 | ||||||||
| Construct_product | WBCnstr00032843 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (179) | |||||||||
| Interaction (147) | |||||||||
| Map_info | Map | V | Position | 6.42088 | Error | 0.000729 | |||
| Positive | Positive_clone | F08H9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031686 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
