WormBase Tree Display for Gene: WBGene00008571
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WBGene00008571 | SMap | S_parent | Sequence | F08B12 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | prmn | |||||
Allele (110) | ||||||
Strain | WBStrain00036390 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00063780 | |||||
00063781 | ||||||
00116485 | ||||||
Ortholog (40) | ||||||
Structured_description | Concise_description | prmn-1 is orthologous to the human gene Prominin1 (PROML1); Prominin1 is a conserved glycoprotein and a member of the pentaspan transmembrane glycoproteins (5-transmembrane, 5-TM). | Curator_confirmed | WBPerson324 | ||
WBPerson1823 | ||||||
WBPerson567 | ||||||
Date_last_updated | 04 Nov 2013 00:00:00 | |||||
Automated_description | Predicted to be located in membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 12; retinal macular dystrophy; and retinitis pigmentosa 41. Is an ortholog of human PROM1 (prominin 1) and PROM2 (prominin 2). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Disease_info | Potential_model | DOID:0110376 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9454) | |
DOID:0111019 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9454) | |||
DOID:0070438 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9454) | |||
Molecular_info | Corresponding_CDS | F08B12.1 | ||||
Corresponding_CDS_history | F08B12.1a:wp264 | |||||
F08B12.1b:wp264 | ||||||
Corresponding_transcript | F08B12.1.1 | |||||
Other_sequence (14) | ||||||
Associated_feature (12) | ||||||
Experimental_info | RNAi_result | WBRNAi00030628 | Inferred_automatically | RNAi_primary | ||
WBRNAi00012863 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00043961 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1012828 | |||||
Expr1033735 | ||||||
Expr1147935 | ||||||
Expr2015097 | ||||||
Expr2033334 | ||||||
Drives_construct | WBCnstr00032867 | |||||
Construct_product | WBCnstr00032867 | |||||
Microarray_results (20) | ||||||
Expression_cluster (171) | ||||||
Interaction (5) | ||||||
Map_info | Map | X | Position | 3.47275 | ||
Positive | Positive_clone | F08B12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00026601 | |||||
WBPaper00038491 | ||||||
WBPaper00042780 | ||||||
WBPaper00055090 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |