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WormBase Tree Display for Gene: WBGene00008130

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Name Class

WBGene00008130SMapS_parentSequenceC47B2
IdentityVersion2
NameCGC_namefbxa-140Person_evidenceWBPerson655
Sequence_nameC47B2.1
Molecular_nameC47B2.1
C47B2.1.1
CE53718
Other_nameCELE_C47B2.1Accession_evidenceNDBBX284601
Public_namefbxa-140
DB_infoDatabaseAceViewgene1N554
WormQTLgeneWBGene00008130
WormFluxgeneWBGene00008130
NDBlocus_tagCELE_C47B2.1
PanthergeneCAEEL|WormBase=WBGene00008130|UniProtKB=O62104
familyPTHR23015
NCBIgene173166
RefSeqproteinNM_001375234.3
TREEFAMTREEFAM_IDTF322479
TrEMBLUniProtAccO62104
UniProt_GCRPUniProtAccO62104
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Mar 2007 11:55:18WBPerson2970Name_changeCGC_namefbxa-140
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (24)
RNASeq_FPKM (74)
Contained_in_operonCEOP1925
OrthologWBGene00141368Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00147532Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00195162Caenorhabditis remaneiFrom_analysisTreeFam
chrI_pilon.g2625Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (212)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in AFD; NSM; germ line; and seam cell based on RNA-seq studies. Is affected by several genes including skn-1; daf-12; and hsf-1 based on tiling array; RNA-seq; and microarray studies. Is affected by thirteen chemicals including hydrogen sulfide; methylmercuric chloride; and rotenone based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC47B2.1
Corresponding_CDS_historyC47B2.1:wp225
C47B2.1:wp273
Corresponding_transcriptC47B2.1.1
Experimental_infoRNAi_resultWBRNAi00061756Inferred_automaticallyRNAi_primary
WBRNAi00029893Inferred_automaticallyRNAi_primary
WBRNAi00003173Inferred_automaticallyRNAi_primary
WBRNAi00042648Inferred_automaticallyRNAi_primary
Expr_patternExpr1025460
Expr1146636
Expr2011476
Expr2029715
Microarray_results (12)
Expression_cluster (91)
Interaction (12)
Map_infoMapIPosition16.214Error0.280512
PositivePositive_cloneC47B2Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene