WormBase Tree Display for Gene: WBGene00008130
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WBGene00008130 | SMap | S_parent | Sequence | C47B2 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-140 | Person_evidence | WBPerson655 | |||||
Sequence_name | C47B2.1 | ||||||||
Molecular_name | C47B2.1 | ||||||||
C47B2.1.1 | |||||||||
CE53718 | |||||||||
Other_name | CELE_C47B2.1 | Accession_evidence | NDB | BX284601 | |||||
Public_name | fbxa-140 | ||||||||
DB_info | Database | AceView | gene | 1N554 | |||||
WormQTL | gene | WBGene00008130 | |||||||
WormFlux | gene | WBGene00008130 | |||||||
NDB | locus_tag | CELE_C47B2.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00008130|UniProtKB=O62104 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 173166 | |||||||
RefSeq | protein | NM_001375234.3 | |||||||
TREEFAM | TREEFAM_ID | TF322479 | |||||||
TrEMBL | UniProtAcc | O62104 | |||||||
UniProt_GCRP | UniProtAcc | O62104 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Mar 2007 11:55:18 | WBPerson2970 | Name_change | CGC_name | fbxa-140 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (24) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP1925 | ||||||||
Ortholog | WBGene00141368 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||
WBGene00147532 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
WBGene00195162 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
chrI_pilon.g2625 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (212) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in AFD; NSM; germ line; and seam cell based on RNA-seq studies. Is affected by several genes including skn-1; daf-12; and hsf-1 based on tiling array; RNA-seq; and microarray studies. Is affected by thirteen chemicals including hydrogen sulfide; methylmercuric chloride; and rotenone based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C47B2.1 | |||||||
Corresponding_CDS_history | C47B2.1:wp225 | ||||||||
C47B2.1:wp273 | |||||||||
Corresponding_transcript | C47B2.1.1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00061756 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029893 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00003173 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00042648 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1025460 | ||||||||
Expr1146636 | |||||||||
Expr2011476 | |||||||||
Expr2029715 | |||||||||
Microarray_results (12) | |||||||||
Expression_cluster (91) | |||||||||
Interaction (12) | |||||||||
Map_info | Map | I | Position | 16.214 | Error | 0.280512 | |||
Positive | Positive_clone | C47B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |