WormBase Tree Display for Gene: WBGene00007393
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WBGene00007393 | SMap | S_parent | Sequence | C06H5 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | fbxa-157 | Person_evidence | WBPerson655 | |||
Sequence_name | C06H5.2 | ||||||
Molecular_name | C06H5.2 | ||||||
C06H5.2.1 | |||||||
CE40736 | |||||||
Other_name | CELE_C06H5.2 | Accession_evidence | NDB | BX284605 | |||
Public_name | fbxa-157 | ||||||
DB_info | Database (10) | ||||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | fbxa | ||||||
Allele (97) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (11) | |||||||
Paralog (220) | |||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in AWC; DD neuron; head mesodermal cell; and intestine based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including glp-1; dpy-10; and hsf-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including Tunicamycin; levamisole; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C06H5.2 | |||||
Corresponding_CDS_history | C06H5.2:wp172 | ||||||
Corresponding_transcript | C06H5.2.1 | ||||||
Associated_feature | WBsf1002761 | ||||||
WBsf1002762 | |||||||
WBsf1021356 | |||||||
WBsf233149 | |||||||
Experimental_info | RNAi_result | WBRNAi00028608 | Inferred_automatically | RNAi_primary | |||
WBRNAi00039955 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010353 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039957 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010354 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039956 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1144034 | ||||||
Expr2011488 | |||||||
Expr2029725 | |||||||
Drives_construct | WBCnstr00033775 | ||||||
Construct_product | WBCnstr00033775 | ||||||
Microarray_results (13) | |||||||
Expression_cluster (180) | |||||||
Interaction (10) | |||||||
Map_info | Map | V | Position | 13.3292 | Error | 0.002304 | |
Positive | Positive_clone | C06H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00012854 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |