WormBase Tree Display for Gene: WBGene00007393
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WBGene00007393 | SMap | S_parent | Sequence | C06H5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | fbxa-157 | Person_evidence | WBPerson655 | |||||
Sequence_name | C06H5.2 | ||||||||
Molecular_name | C06H5.2 | ||||||||
C06H5.2.1 | |||||||||
CE40736 | |||||||||
Other_name | CELE_C06H5.2 | Accession_evidence | NDB | BX284605 | |||||
Public_name | fbxa-157 | ||||||||
DB_info | Database | AceView | gene | 5S381 | |||||
WormQTL | gene | WBGene00007393 | |||||||
WormFlux | gene | WBGene00007393 | |||||||
NDB | locus_tag | CELE_C06H5.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00007393|UniProtKB=O17578 | |||||||
family | PTHR23015 | ||||||||
NCBI | gene | 182349 | |||||||
RefSeq | protein | NM_075109.5 | |||||||
TREEFAM | TREEFAM_ID | TF322479 | |||||||
TrEMBL | UniProtAcc | O17578 | |||||||
UniProt_GCRP | UniProtAcc | O17578 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 01 Mar 2007 11:55:18 | WBPerson2970 | Name_change | CGC_name | fbxa-157 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | fbxa | ||||||||
Allele (97) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (11) | |||||||||
Paralog (220) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in AWC; DD neuron; head mesodermal cell; and intestine based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including glp-1; dpy-10; and hsf-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including Tunicamycin; levamisole; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C06H5.2 | |||||||
Corresponding_CDS_history | C06H5.2:wp172 | ||||||||
Corresponding_transcript | C06H5.2.1 | ||||||||
Associated_feature | WBsf1002761 | ||||||||
WBsf1002762 | |||||||||
WBsf1021356 | |||||||||
WBsf233149 | |||||||||
Experimental_info | RNAi_result | WBRNAi00028608 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039955 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010353 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039957 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010354 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00039956 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1144034 | ||||||||
Expr2011488 | |||||||||
Expr2029725 | |||||||||
Drives_construct | WBCnstr00033775 | ||||||||
Construct_product | WBCnstr00033775 | ||||||||
Microarray_results (13) | |||||||||
Expression_cluster (180) | |||||||||
Interaction | WBInteraction000145001 | ||||||||
WBInteraction000308959 | |||||||||
WBInteraction000310423 | |||||||||
WBInteraction000329246 | |||||||||
WBInteraction000391497 | |||||||||
WBInteraction000412052 | |||||||||
WBInteraction000449609 | |||||||||
WBInteraction000546700 | |||||||||
WBInteraction000547194 | |||||||||
WBInteraction000547195 | |||||||||
Map_info | Map | V | Position | 13.3292 | Error | 0.002304 | |||
Positive | Positive_clone | C06H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00012854 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |