WormBase Tree Display for Gene: WBGene00007322
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WBGene00007322 | SMap | S_parent | Sequence | C05B5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | Sequence_name | C05B5.5 | |||||||
Molecular_name | C05B5.5a | ||||||||
C05B5.5a.1 | |||||||||
CE40686 | |||||||||
C05B5.5a.2 | |||||||||
C05B5.5b | |||||||||
Other_name | CELE_C05B5.5 | Accession_evidence | NDB | BX284603 | |||||
Public_name | C05B5.5 | ||||||||
DB_info | Database | AceView | gene | 3L93 | |||||
WormQTL | gene | WBGene00007322 | |||||||
WormFlux | gene | WBGene00007322 | |||||||
NDB | locus_tag | CELE_C05B5.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00007322|UniProtKB=P34293 | |||||||
family | PTHR21503 | ||||||||
NCBI | gene | 176413 | |||||||
RefSeq | protein | NR_131451.1 | |||||||
NM_066818.5 | |||||||||
SwissProt | UniProtAcc | P34293 | |||||||
UniProt_GCRP | UniProtAcc | P34293 | |||||||
RNAcentral | URSid | URS000078864B | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 11 Aug 2004 11:00:49 | WBPerson1983 | Event | Split_into | WBGene00023482 | ||||
Split_into | WBGene00023482 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (25) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00031425 | Caenorhabditis briggsae | From_analysis | Hillier-set | |||||
OrthoMCL | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
CSP29.g14875 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP39.g5850 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g8021 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cni-C05B5.5 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00571.g13017 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
Sp34_30258300 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrIII_pilon.g8762 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Paralog (54) | |||||||||
Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. | Paper_evidence | WBPaper00012854 | |||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Enriched in Z1.p; Z4.a; germ line; intestine; and male distal tip cell based on proteomic; tiling array; and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray and RNA-seq studies. Is affected by fourteen chemicals including stavudine; Sodium Chloride; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: F-box domain. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C05B5.5a | |||||||
Corresponding_CDS_history | C05B5.5:wp130 | ||||||||
C05B5.5:wp171 | |||||||||
Corresponding_transcript | C05B5.5b | ||||||||
C05B5.5a.1 | |||||||||
C05B5.5a.2 | |||||||||
Experimental_info | RNAi_result | WBRNAi00028472 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00039689 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00010172 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00006997 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1018226 | ||||||||
Expr1143788 | |||||||||
Expr2000440 | |||||||||
Expr2018663 | |||||||||
Drives_construct | WBCnstr00033833 | ||||||||
Construct_product | WBCnstr00033833 | ||||||||
Microarray_results (31) | |||||||||
Expression_cluster (131) | |||||||||
Interaction | WBInteraction000265451 | ||||||||
Map_info | Positive | Positive_clone | C05B5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | III | 1.49168 | |||||||
Reference | WBPaper00012854 | ||||||||
Method | Gene |