WormBase Tree Display for Gene: WBGene00007256
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WBGene00007256 | SMap | S_parent | Sequence | C01H6 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | swsn-9 | Person_evidence | WBPerson260 | |||
WBPerson407 | |||||||
Sequence_name | C01H6.7 | ||||||
Molecular_name | C01H6.7a | ||||||
C01H6.7a.1 | |||||||
CE05190 | |||||||
C01H6.7b | |||||||
CE40891 | |||||||
C01H6.7a.2 | |||||||
C01H6.7b.1 | |||||||
Other_name | tag-298 | ||||||
CELE_C01H6.7 | Accession_evidence | NDB | BX284601 | ||||
Public_name | swsn-9 | ||||||
DB_info | Database | AceView | gene | 1H803 | |||
WormQTL | gene | WBGene00007256 | |||||
WormFlux | gene | WBGene00007256 | |||||
NDB | locus_tag | CELE_C01H6.7 | |||||
Panther | gene | CAEEL|WormBase=WBGene00007256|UniProtKB=Q17581 | |||||
family | PTHR22881 | ||||||
NCBI | gene | 172461 | |||||
RefSeq | protein | NM_001380647.2 | |||||
NM_001380648.1 | |||||||
TREEFAM | TREEFAM_ID | TF106439 | |||||
TrEMBL | UniProtAcc | A5JYT2 | |||||
Q17581 | |||||||
UniProt_GCRP | UniProtAcc | Q17581 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | swsn | ||||||
Allele (30) | |||||||
Strain | WBStrain00036150 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00004716 | ||||||
00004717 | |||||||
00004718 | |||||||
Contained_in_operon | CEOP1372 | ||||||
Ortholog (37) | |||||||
Structured_description | Automated_description | Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in muscle cell; pharynx; and somatic gonad. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in acute myeloid leukemia; carcinoma (multiple); and glioblastoma. Is an ortholog of human BRD7 (bromodomain containing 7). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||
Curator_confirmed | WBPerson324 | ||||||
Date_last_updated | 20 May 2019 00:00:00 | ||||||
Potential_model | DOID:3068 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | |||
DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||
DOID:2152 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||
DOID:3070 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||
DOID:0080199 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||
DOID:3069 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||
DOID:9119 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:14310) | ||||
Models_disease_asserted | WBDOannot00000670 | ||||||
Molecular_info | Corresponding_CDS (2) | ||||||
Corresponding_transcript | C01H6.7a.1 | ||||||
C01H6.7a.2 | |||||||
C01H6.7b.1 | |||||||
Other_sequence (20) | |||||||
Associated_feature (12) | |||||||
Experimental_info | RNAi_result (16) | ||||||
Expr_pattern | Expr12274 | ||||||
Expr1012233 | |||||||
Expr1033129 | |||||||
Expr1143490 | |||||||
Expr2017162 | |||||||
Expr2035298 | |||||||
Drives_construct | WBCnstr00020252 | ||||||
WBCnstr00020253 | |||||||
WBCnstr00037870 | |||||||
Construct_product | WBCnstr00020252 | ||||||
WBCnstr00020253 | |||||||
WBCnstr00037870 | |||||||
Regulate_expr_cluster | WBPaper00060764:swsn-9(ok1354)_downregulated | ||||||
WBPaper00060764:swsn-9(ok1354)_upregulated | |||||||
Microarray_results (23) | |||||||
Expression_cluster (168) | |||||||
SAGE_tag (14) | |||||||
Interaction (91) | |||||||
Map_info | Map | I | Position | 1.84959 | Error | 0.001697 | |
Positive | Positive_clone | C01H6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5165 | |||||
4477 | |||||||
4521 | |||||||
Pseudo_map_position | |||||||
Reference (15) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |