WormBase Tree Display for Gene: WBGene00007162

WBGene00007162 SMap: S_parent: Sequence: B0391
  Identity: Version: 2
    Name: CGC_name: fbxa-153 Person_evidence: WBPerson655
      Sequence_name: B0391.5
      Molecular_name: B0391.5
        B0391.5.1
        CE24769
      Other_name: CELE_B0391.5 Accession_evidence: NDB BX284605
      Public_name: fbxa-153
    DB_info: Database: AceView gene 5Q82
        WormQTL gene WBGene00007162
        WormFlux gene WBGene00007162
        NDB locus_tag CELE_B0391.5
        Panther gene CAEEL|WormBase=WBGene00007162|UniProtKB=O62012
          family PTHR23015
        NCBI gene 181950
        RefSeq protein NM_074480.3
        TREEFAM TREEFAM_ID TF322006
        TrEMBL UniProtAcc O62012
        UniProt_GCRP UniProtAcc O62012
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 01 Mar 2007 11:55:18 WBPerson2970 Name_change: CGC_name: fbxa-153
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (108)
    Strain: WBStrain00032548
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP5502
    Ortholog (28)
    Paralog (225)
    Structured_description: Concise_description: fbxa-153 encodes a protein with an N-terminal F-box domain and a C-terminal FTH domain; FBXA-153 has no obvious non-nematode orthologs; FBXA-153 shares N-terminal UNC-13 binding, and thus may share at least some functions, with ERI-1, W04D2.6, and Y55F3AM.13; FBXA-153 has no obvious function in mass RNAi assays. Paper_evidence: WBPaper00027120
          Curator_confirmed: WBPerson567
          Date_last_updated: 25 Oct 2007 00:00:00
      Automated_description: Enriched in several structures, including ABalaaaarl; ABalaaaarr; germ line; neurons; and ventral nerve cord based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including Alovudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; Mos1 transposase, HTH domain; FTH domain; HTH domain in Mos1 transposase; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0391.5
    Corresponding_CDS_history: B0391.5:wp18
    Corresponding_transcript: B0391.5.1
    Other_sequence: CBC01940_1
      CRC09689_1
      CRC00194_1
      CR00036
      CBC12158_1
      CBC05497_1
      CR03552
    Associated_feature: WBsf653458
  Experimental_info: RNAi_result: WBRNAi00039001 Inferred_automatically: RNAi_primary
      WBRNAi00028116 Inferred_automatically: RNAi_primary
      WBRNAi00009737 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013750
      Expr1033081
      Expr1143168
      Expr2011484
      Expr2029722
    Drives_construct: WBCnstr00033957
    Construct_product: WBCnstr00033957
    Microarray_results (16)
    Expression_cluster (210)
    Interaction: WBInteraction000354115
      WBInteraction000414258
      WBInteraction000554770
  Map_info: Map: V Position: 8.4331 Error: 0.003202
    Positive: Positive_clone: B0391 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027120
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene