WormBase Tree Display for Gene: WBGene00007048
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WBGene00007048 | SMap | S_parent | Sequence | C16A3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | nfx-1 | Person_evidence | WBPerson260 | |||||
Sequence_name | C16A3.7 | ||||||||
Molecular_name | C16A3.7 | ||||||||
C16A3.7.1 | |||||||||
CE04007 | |||||||||
Other_name | tag-182 | Person_evidence | WBPerson201 | ||||||
CELE_C16A3.7 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | nfx-1 | ||||||||
DB_info | Database | AceView | gene | 3H467 | |||||
WormQTL | gene | WBGene00007048 | |||||||
WormFlux | gene | WBGene00007048 | |||||||
NDB | locus_tag | CELE_C16A3.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00007048|UniProtKB=Q18034 | |||||||
family | PTHR12360 | ||||||||
NCBI | gene | 175902 | |||||||
RefSeq | protein | NM_065993.8 | |||||||
SwissProt | UniProtAcc | Q18034 | |||||||
TREEFAM | TREEFAM_ID | TF105889 | |||||||
UniProt_GCRP | UniProtAcc | Q18034 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 13:09:06 | WBPerson1845 | Event | Created | |||
2 | 05 Oct 2005 17:16:53 | WBPerson2970 | Event | Acquires_merge | WBGene00015812 | ||||
Name_change | Sequence_name | C16A3.7 | |||||||
3 | 23 Sep 2011 16:19:55 | WBPerson2970 | Name_change | CGC_name | nfx-1 | ||||
Other_name | tag-182 | ||||||||
Acquires_merge | WBGene00015812 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nfx | ||||||||
Allele (47) | |||||||||
Strain | WBStrain00035903 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (12) | |||||||||
Contained_in_operon | CEOP3364 | ||||||||
Ortholog (37) | |||||||||
Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is an ortholog of human NFX1 (nuclear transcription factor, X-box binding 1). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C16A3.7 | |||||||
Corresponding_transcript | C16A3.7.1 | ||||||||
Other_sequence (34) | |||||||||
Associated_feature | WBsf645263 | ||||||||
WBsf978634 | |||||||||
WBsf981495 | |||||||||
WBsf225090 | |||||||||
WBsf225091 | |||||||||
Transcription_factor | WBTranscriptionFactor000725 | ||||||||
Experimental_info | RNAi_result | WBRNAi00010818 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040663 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00005189 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00008054 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1028812 | ||||||||
Expr1033026 | |||||||||
Expr1144712 | |||||||||
Expr2013987 | |||||||||
Expr2032227 | |||||||||
Drives_construct | WBCnstr00037876 | ||||||||
Construct_product | WBCnstr00018629 | ||||||||
WBCnstr00037876 | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (137) | |||||||||
Interaction (129) | |||||||||
Map_info | Map | III | Position | -1.31955 | Error | 0.004331 | |||
Positive | Positive_clone | C16A3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5627 | |||||||
4991 | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027309 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
WBPaper00058224 | |||||||||
WBPaper00064789 | |||||||||
Remark | tag-182 is parsed from CGC strain VC594 | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Please note that this publication erreneously cited nfx-1. The correct gene is nxf-1. | Paper_evidence | WBPaper00041879 | |||||||
Method | Gene |