WormBase Tree Display for Gene: WBGene00007020
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| WBGene00007020 | Evidence | Author_evidence | Bourbon H-M | |||||
|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y104H12D | |||||
| Identity | Version | 1 | ||||||
| Name | CGC_name | mdt-20 | ||||||
| Sequence_name | Y104H12D.1 | |||||||
| Molecular_name | Y104H12D.1a | |||||||
| Y104H12D.1a.1 | ||||||||
| CE28102 | ||||||||
| Y104H12D.1b | ||||||||
| CE49065 | ||||||||
| Y104H12D.1b.1 | ||||||||
| Other_name | CELE_Y104H12D.1 | Accession_evidence | NDB | BX284604 | ||||
| Public_name | mdt-20 | |||||||
| DB_info | Database | AceView | gene | 4B945 | ||||
| WormQTL | gene | WBGene00007020 | ||||||
| WormFlux | gene | WBGene00007020 | ||||||
| NDB | locus_tag | CELE_Y104H12D.1 | ||||||
| Panther | gene | CAEEL|WormBase=WBGene00007020|UniProtKB=Q9N5A1 | ||||||
| family | PTHR12465 | |||||||
| NCBI | gene | 176937 | ||||||
| RefSeq | protein | NM_001380036.2 | ||||||
| NM_001380037.1 | ||||||||
| SwissProt | UniProtAcc | Q9N5A1 | ||||||
| TrEMBL | UniProtAcc | U4PEP3 | ||||||
| UniProt_GCRP | UniProtAcc | Q9N5A1 | ||||||
| Species | Caenorhabditis elegans | |||||||
| History | Version_change | 1 | 14 May 2004 11:48:16 | WBPerson1845 | Event | Created | ||
| Status | Live | |||||||
| Gene_info | Biotype | SO:0001217 | ||||||
| Gene_class | mdt | |||||||
| Allele (126) | ||||||||
| RNASeq_FPKM (74) | ||||||||
| GO_annotation | 00095298 | |||||||
| 00095299 | ||||||||
| 00095300 | ||||||||
| 00095301 | ||||||||
| 00095302 | ||||||||
| 00095303 | ||||||||
| 00095304 | ||||||||
| 00115222 | ||||||||
| 00115223 | ||||||||
| 00115224 | ||||||||
| Contained_in_operon | CEOP4049 | |||||||
| Ortholog (30) | ||||||||
| Structured_description | Automated_description | Predicted to enable transcription coactivator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus and protein-containing complex. Predicted to be part of mediator complex. Is an ortholog of human MED20 (mediator complex subunit 20). | Paper_evidence | WBPaper00065943 | ||||
| Curator_confirmed | WBPerson324 | |||||||
| WBPerson37462 | ||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||
| Molecular_info | Corresponding_CDS | Y104H12D.1a | ||||||
| Y104H12D.1b | ||||||||
| Corresponding_transcript | Y104H12D.1a.1 | |||||||
| Y104H12D.1b.1 | ||||||||
| Other_sequence (13) | ||||||||
| Associated_feature | WBsf995369 | |||||||
| WBsf995370 | ||||||||
| WBsf995371 | ||||||||
| WBsf995372 | ||||||||
| WBsf1016674 | ||||||||
| WBsf1016675 | ||||||||
| WBsf227921 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00055167 | Inferred_automatically | RNAi_primary | ||||
| WBRNAi00117678 | Inferred_automatically | RNAi_primary | ||||||
| WBRNAi00117677 | Inferred_automatically | RNAi_primary | ||||||
| Expr_pattern | Expr1013906 | |||||||
| Expr1033010 | ||||||||
| Expr1158695 | ||||||||
| Expr2013475 | ||||||||
| Expr2031709 | ||||||||
| Microarray_results (16) | ||||||||
| Expression_cluster (53) | ||||||||
| Interaction (18) | ||||||||
| Map_info | Map | IV | Position | -21.3362 | Error | 0.071795 | ||
| Positive | Positive_clone | Y104H12D | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Pseudo_map_position | ||||||||
| Reference | WBPaper00006530 | |||||||
| WBPaper00029038 | ||||||||
| WBPaper00038491 | ||||||||
| WBPaper00055090 | ||||||||
| WBPaper00065308 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
| Method | Gene |
