WormBase Tree Display for Gene: WBGene00006889
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| WBGene00006889 | Evidence | Paper_evidence | WBPaper00005716 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T06G6 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | pfd-3 | Person_evidence | WBPerson3663 | |||||
| WBPerson2136 | |||||||||
| WBPerson286 | |||||||||
| Sequence_name | T06G6.9 | ||||||||
| Molecular_name | T06G6.9 | ||||||||
| T06G6.9.1 | |||||||||
| CE13349 | |||||||||
| Other_name | vbp-1 | Person_evidence | WBPerson286 | ||||||
| CELE_T06G6.9 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | pfd-3 | ||||||||
| DB_info | Database | AceView | gene | 1N321 | |||||
| WormQTL | gene | WBGene00006889 | |||||||
| WormFlux | gene | WBGene00006889 | |||||||
| NDB | locus_tag | CELE_T06G6.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006889|UniProtKB=O18054 | |||||||
| family | PTHR12409 | ||||||||
| NCBI | gene | 173141 | |||||||
| RefSeq | protein | NM_060827.7 | |||||||
| SwissProt | UniProtAcc | O18054 | |||||||
| TREEFAM | TREEFAM_ID | TF313706 | |||||||
| UniProt_GCRP | UniProtAcc | O18054 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 02 Aug 2006 11:39:27 | WBPerson2970 | Name_change | CGC_name | pfd-3 | ||||
| Other_name | vbp-1 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pfd | ||||||||
| Allele (52) | |||||||||
| Strain | WBStrain00027646 | ||||||||
| WBStrain00049384 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00031347 | ||||||||
| 00031348 | |||||||||
| 00031349 | |||||||||
| 00031350 | |||||||||
| 00031351 | |||||||||
| 00031352 | |||||||||
| 00031353 | |||||||||
| 00114968 | |||||||||
| 00114969 | |||||||||
| Ortholog (38) | |||||||||
| Structured_description | Concise_description | pfd-3 encodes a putative prefoldin, orthologous to human VBP1 (OMIM:300133), that is required for normal alpha-tubulin synthesis, microtubule growth, mitotic spindle formation and positioning, early embryonic cell division, and embryonic and larval viability; PFD-3 is expressed cytoplasmically in most, if not all, tissues. | Paper_evidence | WBPaper00004402 | |||||
| WBPaper00004651 | |||||||||
| WBPaper00005716 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00031309 | |||||||||
| WBPaper00031362 | |||||||||
| WBPaper00031363 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable tubulin binding activity. Predicted to be involved in microtubule-based process and tubulin complex assembly. Located in cytoplasm. Expressed in body wall musculature; head muscle; oocyte; pharyngeal muscle cell; and vulval muscle. Is an ortholog of human VBP1 (VHL binding protein 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T06G6.9 | |||||||
| Corresponding_transcript | T06G6.9.1 | ||||||||
| Other_sequence (39) | |||||||||
| Associated_feature | WBsf643778 | ||||||||
| WBsf985673 | |||||||||
| WBsf985674 | |||||||||
| WBsf1010955 | |||||||||
| WBsf218631 | |||||||||
| WBsf218632 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000095 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00026220 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081306 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026219 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052688 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035279 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022868 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070781 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070780 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116634 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2370 | ||||||||
| Expr7845 | |||||||||
| Expr1019926 | |||||||||
| Expr1032921 | |||||||||
| Expr1156294 | |||||||||
| Expr2014843 | |||||||||
| Expr2033078 | |||||||||
| Drives_construct | WBCnstr00001365 | ||||||||
| WBCnstr00034112 | |||||||||
| Construct_product | WBCnstr00034112 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (113) | |||||||||
| Interaction (147) | |||||||||
| Map_info | Map | I | Position | 13.9592 | Error | 0.001726 | |||
| Positive | Positive_clone | T06G6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005716 | ||||||||
| WBPaper00031309 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00063976 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
