WormBase Tree Display for Gene: WBGene00006577
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WBGene00006577 | SMap | S_parent | Sequence | F39H11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | tlf-1 | Person_evidence | WBPerson401 | |||||
Sequence_name | F39H11.2 | ||||||||
Molecular_name | F39H11.2a | ||||||||
F39H11.2a.1 | |||||||||
CE27159 | |||||||||
F39H11.2b | |||||||||
CE42480 | |||||||||
F39H11.2b.1 | |||||||||
Other_name | CELE_F39H11.2 | Accession_evidence | NDB | BX284601 | |||||
Public_name | tlf-1 | ||||||||
DB_info | Database | AceView | gene | 1J274 | |||||
WormQTL | gene | WBGene00006577 | |||||||
WormFlux | gene | WBGene00006577 | |||||||
NDB | locus_tag | CELE_F39H11.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006577|UniProtKB=B2D6P4 | |||||||
family | PTHR10126 | ||||||||
NCBI | gene | 172676 | |||||||
RefSeq | protein | NM_001129002.4 | |||||||
NM_059955.7 | |||||||||
SwissProt | UniProtAcc | B2D6P4 | |||||||
TREEFAM | TREEFAM_ID | TF300102 | |||||||
UniProt_GCRP | UniProtAcc | B2D6P4 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tlf | ||||||||
Allele (66) | |||||||||
Strain | WBStrain00034109 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (17) | |||||||||
Ortholog (38) | |||||||||
Paralog | WBGene00006542 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | The tlf-1 gene encodes a TATA binding protein (TBP)-like factor (TLF-1); TLF-1 is a functional transcriptional factor, and is required in vivo for zygotic embryonic RNA polymerase II transcription. | Paper_evidence | WBPaper00004351 | |||||
WBPaper00004352 | |||||||||
WBPaper00005068 | |||||||||
WBPaper00012788 | |||||||||
WBPaper00012830 | |||||||||
WBPaper00012882 | |||||||||
WBPaper00012897 | |||||||||
WBPaper00013003 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable general transcription initiation factor activity. Involved in embryo development; positive regulation of protein phosphorylation; and regulation of transcription by RNA polymerase II. Located in nucleus. Part of chromatin. Expressed in several structures, including germ line. Is an ortholog of human TBPL1 (TATA-box binding protein like 1). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F39H11.2a | |||||||
F39H11.2b | |||||||||
Corresponding_CDS_history | F39H11.2:wp47 | ||||||||
Corresponding_transcript | F39H11.2a.1 | ||||||||
F39H11.2b.1 | |||||||||
Other_sequence (29) | |||||||||
Associated_feature | WBsf649409 | ||||||||
WBsf664591 | |||||||||
WBsf219965 | |||||||||
WBsf219966 | |||||||||
WBsf219967 | |||||||||
WBsf219968 | |||||||||
Transcription_factor | WBTranscriptionFactor000206 | ||||||||
WBTranscriptionFactor000215 | |||||||||
Experimental_info | RNAi_result (28) | ||||||||
Expr_pattern | Expr1081 | ||||||||
Expr1813 | |||||||||
Expr1019956 | |||||||||
Expr1032711 | |||||||||
Expr1150670 | |||||||||
Expr2017415 | |||||||||
Expr2035554 | |||||||||
Drives_construct | WBCnstr00010071 | ||||||||
WBCnstr00034293 | |||||||||
Construct_product | WBCnstr00010071 | ||||||||
WBCnstr00034293 | |||||||||
Antibody | WBAntibody00000317 | ||||||||
WBAntibody00000318 | |||||||||
Microarray_results (28) | |||||||||
Expression_cluster (102) | |||||||||
Interaction (17) | |||||||||
Map_info | Map | I | Position | 3.01866 | Error | 0.000402 | |||
Positive | Positive_clone | F39H11 | Person_evidence | WBPerson401 | |||||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
Mapping_data | Multi_point | 4728 | |||||||
Pseudo_map_position | |||||||||
Reference (13) | |||||||||
Remark | sequence connection from (corrected) [Tora L, Mango S] | ||||||||
This gene was originally named tlp-1 by Susan Mango, in an abstract,and has now been properly published as tlf-1 | |||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |