WormBase Tree Display for Gene: WBGene00006561
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| WBGene00006561 | Evidence | Accession_evidence | EMBL | AY145133 | |||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y38C1AA | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | tcl-2 | Person_evidence | WBPerson251 | |||||
| Sequence_name | Y38C1AA.4 | ||||||||
| Molecular_name | Y38C1AA.4a | ||||||||
| Y38C1AA.4a.1 | |||||||||
| CE31644 | |||||||||
| Y38C1AA.4b | |||||||||
| CE48777 | |||||||||
| Y38C1AA.4b.1 | |||||||||
| Other_name | Y38C1AA.g | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y38C1AA.4 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | tcl-2 | ||||||||
| DB_info | Database | AceView | gene | 4A935 | |||||
| WormQTL | gene | WBGene00006561 | |||||||
| WormFlux | gene | WBGene00006561 | |||||||
| NDB | locus_tag | CELE_Y38C1AA.4 | |||||||
| NCBI | gene | 176832 | |||||||
| RefSeq | protein | NM_001307376.3 | |||||||
| NM_067474.7 | |||||||||
| SwissProt | UniProtAcc | Q9N428 | |||||||
| TrEMBL | UniProtAcc | U4PB86 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N428 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tcl | ||||||||
| Allele (71) | |||||||||
| Strain | WBStrain00024028 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00094215 | ||||||||
| 00094216 | |||||||||
| 00094217 | |||||||||
| 00094218 | |||||||||
| 00094219 | |||||||||
| 00094220 | |||||||||
| 00094221 | |||||||||
| 00094222 | |||||||||
| 00094223 | |||||||||
| Ortholog (20) | |||||||||
| Structured_description | Automated_description | Involved in asymmetric cell division. Located in cytoplasm and nucleus. Expressed in several structures, including TL.p; TR.p; inner labial neurons; seam cell; and tail neurons. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38C1AA.4a | |||||||
| Y38C1AA.4b | |||||||||
| Corresponding_CDS_history | Y38C1AA.4:wp82 | ||||||||
| Corresponding_transcript | Y38C1AA.4a.1 | ||||||||
| Y38C1AA.4b.1 | |||||||||
| Other_sequence | CRC05132_1 | ||||||||
| CBC01321_1 | |||||||||
| CR05112 | |||||||||
| CJC00254_1 | |||||||||
| CR00323 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00061428 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00000857 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036828 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055985 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2099 | ||||||||
| Expr2550 | |||||||||
| Expr1022163 | |||||||||
| Expr1032700 | |||||||||
| Expr1159505 | |||||||||
| Expr2017363 | |||||||||
| Expr2035500 | |||||||||
| Drives_construct | WBCnstr00000981 | ||||||||
| WBCnstr00000982 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction (25) | |||||||||
| Map_info | Map | IV | Position | -26.8642 | Error | 0.003866 | |||
| Positive | Positive_clone | Y38C1AA | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4870 | |||||||
| 4896 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005832 | ||||||||
| WBPaper00012330 | |||||||||
| WBPaper00012478 | |||||||||
| WBPaper00019789 | |||||||||
| WBPaper00027318 | |||||||||
| WBPaper00032230 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
