WormBase Tree Display for Gene: WBGene00006489
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WBGene00006489 | SMap | S_parent | Sequence | ZK856 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | zhit-3 | Person_evidence | WBPerson260 | |||
Sequence_name | ZK856.9 | ||||||
Molecular_name | ZK856.9 | ||||||
ZK856.9.1 | |||||||
CE29017 | |||||||
Other_name | tag-143 | Person_evidence | WBPerson201 | ||||
CELE_ZK856.9 | Accession_evidence | NDB | BX284605 | ||||
Public_name | zhit-3 | ||||||
DB_info | Database | AceView | gene | 5K692 | |||
WormQTL | gene | WBGene00006489 | |||||
WormFlux | gene | WBGene00006489 | |||||
NDB | locus_tag | CELE_ZK856.9 | |||||
Panther | gene | CAEEL|WormBase=WBGene00006489|UniProtKB=Q23644 | |||||
family | PTHR13483 | ||||||
NCBI | gene | 179420 | |||||
RefSeq | protein | NM_073226.5 | |||||
TREEFAM | TREEFAM_ID | TF315656 | |||||
TrEMBL | UniProtAcc | Q23644 | |||||
UniProt_GCRP | UniProtAcc | Q23644 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | zhit | ||||||
Allele (33) | |||||||
Strain | WBStrain00035544 | ||||||
WBStrain00034741 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00079182 | ||||||
00079183 | |||||||
00079184 | |||||||
00079185 | |||||||
00079186 | |||||||
00079187 | |||||||
00079188 | |||||||
00079189 | |||||||
Contained_in_operon | CEOP5248 | ||||||
Ortholog (32) | |||||||
Structured_description | Automated_description | Predicted to be involved in box C/D snoRNP assembly; maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and snoRNA localization. Located in nucleus. Is an ortholog of human ZNHIT6 (zinc finger HIT-type containing 6). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZK856.9 | |||||
Corresponding_CDS_history | ZK856.9:wp60 | ||||||
Corresponding_transcript | ZK856.9.1 | ||||||
Other_sequence (14) | |||||||
Associated_feature | WBsf1001073 | ||||||
WBsf1020277 | |||||||
WBsf234350 | |||||||
Transcription_factor | WBTranscriptionFactor000701 | ||||||
Experimental_info | RNAi_result | WBRNAi00081790 | Inferred_automatically | RNAi_primary | |||
WBRNAi00081828 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059780 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00081857 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr9511 | ||||||
Expr1026144 | |||||||
Expr1032652 | |||||||
Expr1163209 | |||||||
Expr1200193 | |||||||
Expr2018134 | |||||||
Expr2036271 | |||||||
Drives_construct | WBCnstr00037896 | ||||||
Construct_product (2) | |||||||
Microarray_results (16) | |||||||
Expression_cluster (96) | |||||||
Interaction (55) | |||||||
Map_info | Map | V | Position | 2.36395 | Error | 0.00689 | |
Positive | Positive_clone | ZK856 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5312 | |||||
4931 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00027309 | ||||||
WBPaper00027634 | |||||||
WBPaper00028564 | |||||||
WBPaper00038444 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00060613 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |