WormBase Tree Display for Gene: WBGene00006407
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WBGene00006407 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_I | ||||
Identity | Version | 4 | |||||
Name | CGC_name | lim-9 | Person_evidence | WBPerson54 | |||
WBPerson505 | |||||||
WBPerson545 | |||||||
Sequence_name | F25H5.1 | ||||||
Molecular_name (24) | |||||||
Other_name | tag-15 | Person_evidence | WBPerson102 | ||||
CELE_F25H5.1 | Accession_evidence | NDB | BX284601 | ||||
Public_name | lim-9 | ||||||
DB_info | Database | AceView | gene | 1J758 | |||
WormQTL | gene | WBGene00006407 | |||||
WormFlux | gene | WBGene00006407 | |||||
NDB | locus_tag | CELE_F25H5.1 | |||||
Panther | gene | CAEEL|WormBase=F25H5.1i|UniProtKB=A0A0K3AQM0 | |||||
family | PTHR24205 | ||||||
NCBI | gene | 3565712 | |||||
RefSeq | protein | NM_001377616.3 | |||||
NM_001026238.6 | |||||||
NM_001377617.3 | |||||||
NM_001026237.7 | |||||||
NM_001313465.3 | |||||||
NM_001313491.3 | |||||||
NM_001030057.5 | |||||||
NM_001313466.5 | |||||||
TREEFAM | TREEFAM_ID | TF321684 | |||||
TrEMBL | UniProtAcc | G5EDJ5 | |||||
A0A0K3AQM0 | |||||||
Q3S1I9 | |||||||
A0A0K3AQP4 | |||||||
O17833 | |||||||
G5EEA4 | |||||||
A0A0K3ATK8 | |||||||
G5EF39 | |||||||
UniProt_GCRP | UniProtAcc | A0A0K3AQM0 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (4) | ||||||
Acquires_merge | WBGene00008108 | ||||||
WBGene00008109 | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lim | ||||||
Allele (432) | |||||||
Strain | WBStrain00035585 | ||||||
WBStrain00035699 | |||||||
In_cluster | conserved_miRNA_siRNA_cluster | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00000569 | ||||||
00000570 | |||||||
00000571 | |||||||
00000572 | |||||||
00000573 | |||||||
00014123 | |||||||
00014124 | |||||||
00014125 | |||||||
00014126 | |||||||
00114034 | |||||||
Ortholog (55) | |||||||
Structured_description (2) | |||||||
Molecular_info | Corresponding_CDS | F25H5.1b | |||||
F25H5.1c | |||||||
F25H5.1d | |||||||
F25H5.1e | |||||||
F25H5.1f | |||||||
F25H5.1g | |||||||
F25H5.1h | |||||||
F25H5.1i | |||||||
Corresponding_CDS_history | F25H5.1a:wp136 | ||||||
F25H5.1a:wp275 | |||||||
F25H5.1b:wp136 | |||||||
F25H5.1b:wp246 | |||||||
F25H5.1c:wp246 | |||||||
F25H5.1d:wp246 | |||||||
F25H5.1f:wp183 | |||||||
Corresponding_transcript | F25H5.1b.1 | ||||||
F25H5.1c.1 | |||||||
F25H5.1d.1 | |||||||
F25H5.1e.1 | |||||||
F25H5.1f.1 | |||||||
F25H5.1g.1 | |||||||
F25H5.1h.1 | |||||||
F25H5.1i.1 | |||||||
Other_sequence (62) | |||||||
Associated_feature (44) | |||||||
Transcription_factor | WBTranscriptionFactor000581 | ||||||
Experimental_info | RNAi_result (14) | ||||||
Expr_pattern | Expr8313 | ||||||
Expr8316 | |||||||
Expr8552 | |||||||
Expr1025302 | |||||||
Expr1029193 | |||||||
Expr1032599 | |||||||
Expr1146521 | |||||||
Expr1149460 | |||||||
Expr2013155 | |||||||
Expr2031387 | |||||||
Drives_construct | WBCnstr00013257 | ||||||
Antibody | WBAntibody00001285 | ||||||
Microarray_results (81) | |||||||
Expression_cluster (241) | |||||||
Interaction (40) | |||||||
Map_info | Map | I | Position | 3.6557 | Error | 0.004609 | |
Positive | Positive_clone | F25H5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (13) | |||||||
Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||
Method | Gene |