WormBase Tree Display for Gene: WBGene00006039
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WBGene00006039 | SMap | S_parent | Sequence | K07F5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | ssp | ||||||
Allele (12) | |||||||
Legacy_information | [C.elegansII] NMK. Sperm-specific transcript, 0.5 kb. Member of multi-gene family. [BA] | ||||||
RNASeq_FPKM (74) | |||||||
Ortholog (44) | |||||||
Paralog (34) | |||||||
Structured_description | Automated_description | Enriched in amphid sheath cell; germ line; sperm; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and age-1 based on RNA-seq; microarray; and proteomic studies. Is affected by twenty-seven chemicals including hydrogen sulfide; Ethanol; and methylmercury hydroxide based on microarray; RNA-seq; and proteomic studies. Is predicted to encode a protein with the following domains: PapD-like superfamily; Major sperm protein (MSP) domain; Immunoglobulin-like fold; MSP (Major sperm protein) domain; and Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K07F5.9 | |||||
Corresponding_transcript | K07F5.9.1 | ||||||
Other_sequence (61) | |||||||
Associated_feature | WBsf230627 | ||||||
Experimental_info | RNAi_result | WBRNAi00022597 | Inferred_automatically | RNAi_primary | |||
WBRNAi00034086 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016754 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00007486 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00050194 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern (3) | |||||||
Drives_construct | WBCnstr00034580 | ||||||
Construct_product | WBCnstr00034580 | ||||||
Microarray_results (16) | |||||||
Expression_cluster (217) | |||||||
Interaction (224) | |||||||
Map_info | Map | IV | Position | 4.43337 | Error | 0.000392 | |
Positive | Positive_clone | K07F5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00004349 | ||||||
WBPaper00024421 | |||||||
WBPaper00057218 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |