WormBase Tree Display for Gene: WBGene00005918
expand all nodes | collapse all nodes | view schema
| WBGene00005918 | SMap | S_parent | Sequence | R05D8 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | CGC_name | srx-27 | Person_evidence | WBPerson522 | ||||||
| Sequence_name | R05D8.12 | |||||||||
| Molecular_name | R05D8.12 | |||||||||
| Other_name | CELE_R05D8.12 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srx-27 | |||||||||
| DB_info | Database | AceView | gene | 5D228 | ||||||
| WormQTL | gene | WBGene00005918 | ||||||||
| NDB | locus_tag | CELE_R05D8.12 | ||||||||
| NCBI | gene | 13212035 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 11 Feb 2005 11:27:06 | WBPerson1849 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srx | |||||||||
| Allele (36) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Paralog | WBGene00005920 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Automated_description | Is affected by daf-2 and eat-2 based on microarray studies. Is affected by allantoin and Sirolimus based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | R05D8.12:wp138 | ||||||||
| Corresponding_pseudogene | R05D8.12 | |||||||||
| Experimental_info | Microarray_results | SMD_R05D8.G | ||||||||
| 176814_at | ||||||||||
| A_12_P133855 | ||||||||||
| A_12_P133856 | ||||||||||
| GPL19516_CGZ0031027 | ||||||||||
| GPL21109_R05D8.12 | ||||||||||
| Expression_cluster | WBPaper00032528:L3_depleted | |||||||||
| WBPaper00055386:daf-2(e1370)_downregulated | ||||||||||
| WBPaper00061527:176662_at-Y53F4B.16 | ||||||||||
| cgc4489_group_21 | ||||||||||
| WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO | ||||||||||
| WBPaper00048989:N2_allantoin_upregulated | ||||||||||
| WBPaper00048989:N2_rapamycin_upregulated | ||||||||||
| Map_info | Map | V | Position | -13.1786 | Error | 0.002289 | ||||
| Positive | Positive_clone | R05D8 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
