WormBase Tree Display for Gene: WBGene00005540
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| WBGene00005540 | Evidence | Person_evidence | WBPerson522 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | B0454 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | sri-28 | Person_evidence | WBPerson522 | |||||
| Sequence_name | B0454.3 | ||||||||
| Molecular_name | B0454.3 | ||||||||
| B0454.3.1 | |||||||||
| CE25742 | |||||||||
| Other_name | CELE_B0454.3 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sri-28 | ||||||||
| DB_info | Database | AceView | gene | 2D339 | |||||
| WormQTL | gene | WBGene00005540 | |||||||
| WormFlux | gene | WBGene00005540 | |||||||
| NDB | locus_tag | CELE_B0454.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005540|UniProtKB=O17171 | |||||||
| family | PTHR45830 | ||||||||
| NCBI | gene | 191903 | |||||||
| RefSeq | protein | NM_062032.6 | |||||||
| TREEFAM | TREEFAM_ID | TF315276 | |||||||
| TrEMBL | UniProtAcc | O17171 | |||||||
| UniProt_GCRP | UniProtAcc | O17171 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sri | ||||||||
| Allele (57) | |||||||||
| Strain | WBStrain00003727 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00029393 | ||||||||
| Ortholog (29) | |||||||||
| Paralog (292) | |||||||||
| Structured_description | Automated_description | Predicted to be located in membrane. Expressed in ADLL and ADLR. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0454.3 | |||||||
| Corresponding_transcript | B0454.3.1 | ||||||||
| Associated_feature | WBsf987138 | ||||||||
| WBsf220979 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039069 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009782 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5073 | ||||||||
| Expr14098 | |||||||||
| Expr1016839 | |||||||||
| Expr1143231 | |||||||||
| Expr2016538 | |||||||||
| Expr2034738 | |||||||||
| Drives_construct | WBCnstr00004162 | ||||||||
| WBCnstr00034898 | |||||||||
| Construct_product | WBCnstr00034898 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (21) | |||||||||
| SAGE_tag | SAGE:atctaccact | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:cttcttgtgg | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction | WBInteraction000171881 | ||||||||
| WBInteraction000310112 | |||||||||
| WBInteraction000349421 | |||||||||
| Map_info | Map | II | Position | -8.79015 | Error | 0.031449 | |||
| Positive | Positive_clone | B0454 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
