WormBase Tree Display for Gene: WBGene00005193
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WBGene00005193 | SMap | S_parent | Sequence | CHROMOSOME_X | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | srg-36 | Person_evidence | WBPerson42 | |||||
Sequence_name | K04C1.6 | ||||||||
Molecular_name | K04C1.6 | ||||||||
K04C1.6.1 | |||||||||
CE18849 | |||||||||
Other_name | CELE_K04C1.6 | Accession_evidence | NDB | BX284606 | |||||
Public_name | srg-36 | ||||||||
DB_info | Database | AceView | gene | XO848 | |||||
WormQTL | gene | WBGene00005193 | |||||||
WormFlux | gene | WBGene00005193 | |||||||
NDB | locus_tag | CELE_K04C1.6 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00005193|UniProtKB=G5EEF5 | |||||||
family | PTHR31552 | ||||||||
NCBI | gene | 186981 | |||||||
RefSeq | protein | NM_077969.2 | |||||||
TREEFAM | TREEFAM_ID | TF352435 | |||||||
TrEMBL | UniProtAcc | G5EEF5 | |||||||
UniProt_GCRP | UniProtAcc | G5EEF5 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | srg | ||||||||
Allele (101) | |||||||||
Strain | WBStrain00055378 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00015171 | ||||||||
00015172 | |||||||||
00015173 | |||||||||
00015174 | |||||||||
00108439 | |||||||||
00108440 | |||||||||
00108441 | |||||||||
Ortholog (19) | |||||||||
Paralog (17) | |||||||||
Structured_description | Concise_description | srg-36 encodes a G-protein coupled receptor (GPCR) of the serpentine receptor class g (srg) which is involved in perception of ascarosides, which are the major small-molecule components of the dauer pheromone and regulate developmental diapause (dauer), olfactory learning, social behaviors and life-span; srg-36 functions redundantly with srg-37 in the perception of ascaroside C3 to regulate dauer development; srg-36 and srg-37 are localized to the sensory cilia of the ASI chemosensory neuron. | Paper_evidence | WBPaper00040097 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 16 Sep 2013 00:00:00 | ||||||||
Automated_description | Predicted to enable transmembrane signaling receptor activity. Involved in dauer larval development. Located in non-motile cilium. Expressed in ASIL; ASIR; and neurons. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K04C1.6 | |||||||
Corresponding_transcript | K04C1.6.1 | ||||||||
Other_sequence | JI169728.1 | ||||||||
JI165249.1 | |||||||||
JI169442.1 | |||||||||
Associated_feature | WBsf1024370 | ||||||||
Experimental_info | RNAi_result | WBRNAi00016580 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016584 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049887 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00049882 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00033939 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr9604 | ||||||||
Expr10998 | |||||||||
Expr13660 | |||||||||
Expr16048 | |||||||||
Expr1013942 | |||||||||
Expr1153592 | |||||||||
Drives_construct | WBCnstr00014166 | ||||||||
WBCnstr00035134 | |||||||||
WBCnstr00042736 | |||||||||
Construct_product | WBCnstr00014166 | ||||||||
WBCnstr00014168 | |||||||||
WBCnstr00017612 | |||||||||
WBCnstr00035134 | |||||||||
WBCnstr00039932 | |||||||||
WBCnstr00042736 | |||||||||
Microarray_results (21) | |||||||||
Expression_cluster (31) | |||||||||
Interaction (169) | |||||||||
WBProcess | WBbiopr:00000025 | ||||||||
Map_info | Map | X | Position | 16.67 | |||||
Positive | Positive_clone | K04C1 | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00040097 | ||||||||
WBPaper00056761 | |||||||||
WBPaper00058008 | |||||||||
WBPaper00058761 | |||||||||
WBPaper00059668 | |||||||||
WBPaper00061168 | |||||||||
WBPaper00061671 | |||||||||
WBPaper00062173 | |||||||||
WBPaper00065565 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |