WormBase Tree Display for Gene: WBGene00004999
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WBGene00004999 | Evidence | Author_evidence | Patthy L | ||||
---|---|---|---|---|---|---|---|
Hodgkin JA | |||||||
SMap | S_parent | Sequence | K09F5 | ||||
Identity | Version | 2 | |||||
Name | CGC_name | spp-14 | |||||
Sequence_name | K09F5.3 | ||||||
Molecular_name | K09F5.3 | ||||||
K09F5.3.1 | |||||||
CE38527 | |||||||
Other_name | uvt-1 | CGC_data_submission | |||||
CELE_K09F5.3 | Accession_evidence | NDB | BX284606 | ||||
Public_name | spp-14 | ||||||
DB_info | Database | WormQTL | gene | WBGene00004999 | |||
WormFlux | gene | WBGene00004999 | |||||
NDB | locus_tag | CELE_K09F5.3 | |||||
NCBI | gene | 181032 | |||||
RefSeq | protein | NM_001047806.7 | |||||
TREEFAM | TREEFAM_ID | TF343148 | |||||
TrEMBL | UniProtAcc | Q2XN18 | |||||
UniProt_GCRP | UniProtAcc | Q2XN18 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | spp | ||||||
Allele (15) | |||||||
Legacy_information | Abundant transcript present in larvae adults. | ||||||
[C.elegansII] NMK. Abundant 0.5 kb transcript present in larvae, adults. [Heine and Blumenthal 1986] | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (21) | |||||||
Paralog (12) | |||||||
Structured_description | Automated_description | Expressed in male. Is predicted to encode a protein with the following domains: Saposin B type domain and Saposin-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | K09F5.3 | |||||
Corresponding_CDS_history | K09F5.3a:wp152 | ||||||
K09F5.3b:wp152 | |||||||
K09F5.3c:wp152 | |||||||
Corresponding_transcript | K09F5.3.1 | ||||||
Other_sequence | FD515535.1 | ||||||
CRC02133_1 | |||||||
CJC02594_1 | |||||||
CBC01458_1 | |||||||
CSC00173_1 | |||||||
Associated_feature | WBsf648327 | ||||||
Experimental_info | RNAi_result | WBRNAi00001068 | Inferred_automatically | RNAi_primary | |||
Expr_pattern | Expr1237 | ||||||
Expr1015786 | |||||||
Expr1154147 | |||||||
Expr2016069 | |||||||
Expr2034305 | |||||||
Drives_construct | WBCnstr00035279 | ||||||
Construct_product | WBCnstr00035279 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (211) | |||||||
Interaction (11) | |||||||
Map_info | Map | X | Position | -1.33363 | Error | 0.000987 | |
Positive | Positive_clone | K09F5 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00000873 | ||||||
WBPaper00001841 | |||||||
WBPaper00024209 | |||||||
WBPaper00025088 | |||||||
WBPaper00033099 | |||||||
WBPaper00064841 | |||||||
WBPaper00065988 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |