WormBase Tree Display for Gene: WBGene00004979
expand all nodes | collapse all nodes | view schema
WBGene00004979 | SMap | S_parent | Sequence | F42G8 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | sph | ||||||
Allele (23) | |||||||
Strain | WBStrain00031923 | ||||||
WBStrain00036200 | |||||||
WBStrain00003813 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00032640 | ||||||
00032641 | |||||||
00032642 | |||||||
00032643 | |||||||
00032644 | |||||||
00113388 | |||||||
00113389 | |||||||
Ortholog (43) | |||||||
Structured_description | Concise_description | sph-1 encodes a member of the synaptophysin/synaptoporin family that contains a MARVEL domain, a membrane-associating domain found in lipid-associating proteins, and contains a transmembrane domain. | Curator_confirmed | WBPerson48 | |||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Located in cytoplasmic vesicle. Expressed in anal sphincter muscle and pharyngeal muscle cell. Human ortholog(s) of this gene implicated in Alzheimer's disease and non-syndromic X-linked intellectual disability 96. Is an ortholog of human SYNPR (synaptoporin) and SYPL1 (synaptophysin like 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11506) | ||
DOID:0112035 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11506) | ||||
Molecular_info | Corresponding_CDS | F42G8.11 | |||||
Corresponding_CDS_history | F42G8.11:wp156 | ||||||
Corresponding_transcript | F42G8.11.1 | ||||||
Other_sequence (24) | |||||||
Associated_feature | WBsf651983 | ||||||
WBsf651984 | |||||||
WBsf668084 | |||||||
WBsf230386 | |||||||
Experimental_info | RNAi_result (3) | ||||||
Expr_pattern | Expr3982 | ||||||
Expr1020981 | |||||||
Expr1032477 | |||||||
Expr1150991 | |||||||
Expr2016054 | |||||||
Expr2034289 | |||||||
Drives_construct | WBCnstr00011795 | ||||||
WBCnstr00035295 | |||||||
Construct_product | WBCnstr00035295 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (114) | |||||||
Interaction | WBInteraction000120132 | ||||||
WBInteraction000122897 | |||||||
WBInteraction000122898 | |||||||
WBInteraction000134602 | |||||||
WBInteraction000166894 | |||||||
WBInteraction000180665 | |||||||
WBInteraction000193904 | |||||||
WBInteraction000428878 | |||||||
WBInteraction000444399 | |||||||
Map_info | Map | IV | Position | 3.61293 | Error | 0.001689 | |
Positive | Positive_clone | F42G8 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 4986 | |||||
4448 | |||||||
5613 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00027627 | ||||||
WBPaper00028886 | |||||||
WBPaper00031849 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |