WormBase Tree Display for Gene: WBGene00004892
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| WBGene00004892 | Evidence | Paper_evidence | WBPaper00024174 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | H21P03 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | sms-1 | |||||||
| Sequence_name | H21P03.3 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_H21P03.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | sms-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sms | ||||||||
| Allele (174) | |||||||||
| Strain | WBStrain00032543 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00018735 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004893 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021075 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00004894 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable ceramide cholinephosphotransferase activity and sphingomyelin synthase activity. Predicted to be involved in ceramide biosynthetic process and sphingomyelin biosynthetic process. Predicted to be located in Golgi membrane. Expressed in head muscle; pharyngeal cell; rectal muscle; spermatheca; and vulval muscle. Human ortholog(s) of this gene implicated in calvarial doughnut lesions with bone fragility. Is an ortholog of human SGMS2 (sphingomyelin synthase 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080721 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:28395) | ||||
| Molecular_info | Corresponding_CDS | H21P03.3a | |||||||
| H21P03.3b | |||||||||
| H21P03.3c | |||||||||
| H21P03.3d | |||||||||
| Corresponding_CDS_history | H21P03.3a:wp211 | ||||||||
| H21P03.3b:wp211 | |||||||||
| H21P03.3c:wp211 | |||||||||
| Corresponding_transcript | H21P03.3a.1 | ||||||||
| H21P03.3b.1 | |||||||||
| H21P03.3c.1 | |||||||||
| H21P03.3d.1 | |||||||||
| Other_sequence (15) | |||||||||
| Associated_feature (26) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00016292 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00076525 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033737 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049453 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13149 | ||||||||
| Expr13150 | |||||||||
| Expr13151 | |||||||||
| Expr1011060 | |||||||||
| Expr1032431 | |||||||||
| Expr1153180 | |||||||||
| Expr2015926 | |||||||||
| Expr2034159 | |||||||||
| Drives_construct | WBCnstr00038591 | ||||||||
| WBCnstr00038592 | |||||||||
| Construct_product | WBCnstr00038592 | ||||||||
| Microarray_results (37) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction | WBInteraction000405327 | ||||||||
| WBInteraction000418560 | |||||||||
| WBInteraction000423211 | |||||||||
| WBInteraction000544160 | |||||||||
| Map_info | Map | IV | Position | 4.98951 | Error | 0.000466 | |||
| Positive | Positive_clone | H21P03 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024174 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039359 | |||||||||
| WBPaper00040560 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00042609 | |||||||||
| WBPaper00043172 | |||||||||
| WBPaper00050246 | |||||||||
| WBPaper00055090 | |||||||||
| Picture | WBPicture0000013061 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
