WormBase Tree Display for Gene: WBGene00004743
expand all nodes | collapse all nodes | view schema
| WBGene00004743 | SMap | S_parent | Sequence | M01D7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | scm-1 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | M01D7.2 | ||||||||
| Molecular_name | M01D7.2a | ||||||||
| M01D7.2a.1 | |||||||||
| CE25946 | |||||||||
| M01D7.2b | |||||||||
| CE49685 | |||||||||
| M01D7.2c | |||||||||
| CE49629 | |||||||||
| M01D7.2b.1 | |||||||||
| M01D7.2c.1 | |||||||||
| Other_name | CELE_M01D7.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | scm-1 | ||||||||
| DB_info | Database | AceView | gene | 1C336 | |||||
| WormQTL | gene | WBGene00004743 | |||||||
| WormFlux | gene | WBGene00004743 | |||||||
| NDB | locus_tag | CELE_M01D7.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004743|UniProtKB=G5EED5 | |||||||
| family | PTHR10687 | ||||||||
| NCBI | gene | 171756 | |||||||
| RefSeq | protein | NM_001306425.3 | |||||||
| NM_058510.8 | |||||||||
| NM_001306426.3 | |||||||||
| TrEMBL | UniProtAcc | X5M5X6 | |||||||
| X5M914 | |||||||||
| G5EED5 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EED5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | scm | ||||||||
| Allele (242) | |||||||||
| Strain | WBStrain00022750 | ||||||||
| WBStrain00033327 | |||||||||
| WBStrain00003813 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00015883 | ||||||||
| 00015884 | |||||||||
| 00015885 | |||||||||
| 00015886 | |||||||||
| 00015887 | |||||||||
| 00015888 | |||||||||
| 00113116 | |||||||||
| 00113117 | |||||||||
| Ortholog (53) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in protein transport. Located in cytoplasmic vesicle. Expressed in amphid neurons; coelomocyte; and spermatheca. Is an ortholog of human SCAMP1 (secretory carrier membrane protein 1) and SCAMP2 (secretory carrier membrane protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M01D7.2a | |||||||
| M01D7.2b | |||||||||
| M01D7.2c | |||||||||
| Corresponding_transcript | M01D7.2a.1 | ||||||||
| M01D7.2b.1 | |||||||||
| M01D7.2c.1 | |||||||||
| Other_sequence (63) | |||||||||
| Associated_feature | WBsf648950 | ||||||||
| WBsf982772 | |||||||||
| WBsf1009262 | |||||||||
| WBsf1009263 | |||||||||
| WBsf218993 | |||||||||
| WBsf218994 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00050744 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00065634 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3980 | ||||||||
| Expr1023534 | |||||||||
| Expr1032341 | |||||||||
| Expr1154441 | |||||||||
| Expr2015644 | |||||||||
| Expr2033876 | |||||||||
| Drives_construct | WBCnstr00011793 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (32) | |||||||||
| Map_info | Map | I | Position | -12.492 | Error | 0.002823 | |||
| Positive | Positive_clone | M01D7 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027627 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
