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WormBase Tree Display for Gene: WBGene00004677

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Name Class

WBGene00004677EvidenceCGC_data_submission
SMapS_parentSequenceF31C3
IdentityVersion2
NameCGC_namerrn-3.56
Sequence_nameF31C3.10
Molecular_nameF31C3.10
Other_nameCELE_F31C3.10Accession_evidenceNDBBX284601
Public_namerrn-3.56
DB_infoDatabaseNDBlocus_tagCELE_F31C3.10
NCBIgene13183151
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
204 Sep 2013 14:32:14WBPerson1983EventChanged_classTranscriptPseudogene
StatusLive
Gene_infoBiotypeSO:0000336
Gene_classrrn
Allele (18)
In_clusterrDNA_cluster
RNASeq_FPKM (74)
Structured_descriptionConcise_descriptionrrn-3.56 (F31C3.10) encodes a 26s/28s ribosomal RNA (rRNA) fragment; This is a partial/pseudogenic copy of a non-coding RNA component of the large ribosomal subunit.Curator_confirmedWBPerson1983
Date_last_updated24 Sep 2013 00:00:00
Automated_descriptionEnriched in DA neuron; MC neuron; cephalic sheath cell; and command interneuron based on single-cell RNA-seq studies. Is affected by several genes including daf-16; eat-2; and npr-1 based on RNA-seq studies. Is affected by eight chemicals including rotenone; multi-walled carbon nanotube; and allantoin based on RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_transcript_historyF31C3.10:wp239
Corresponding_pseudogeneF31C3.10
Other_sequence (66)
Experimental_infoExpression_cluster (85)
Map_infoMapIPosition29.9449
PositivePositive_cloneF31C3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Remark26s ribosomal RNA fragment
rrn-1 was previously used to designate the whole ribosomal DNA tandem array. Due to gene name assignment to each ribosomal RNA subunits within the cluster, the phenotypic descriptions, mapping data and allele information of rrn-1 have been attached to rDNA_cluster, which contains all the rrn lociCGC_data_submission
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene