WormBase Tree Display for Gene: WBGene00004466
expand all nodes | collapse all nodes | view schema
WBGene00004466 | SMap | S_parent | Sequence | B0205 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | rpn-10 | Person_evidence | WBPerson1551 | |||||
Sequence_name | B0205.3 | ||||||||
Molecular_name | B0205.3 | ||||||||
B0205.3.1 | |||||||||
CE26355 | |||||||||
Other_name | mcb-1 | CGC_data_submission | |||||||
CELE_B0205.3 | Accession_evidence | NDB | BX284601 | ||||||
Public_name | rpn-10 | ||||||||
DB_info | Database | AceView | gene | 1L308 | |||||
WormQTL | gene | WBGene00004466 | |||||||
WormFlux | gene | WBGene00004466 | |||||||
NDB | locus_tag | CELE_B0205.3 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00004466|UniProtKB=O61742 | |||||||
family | PTHR10223 | ||||||||
NCBI | gene | 172977 | |||||||
RefSeq | protein | NM_060408.5 | |||||||
SwissProt | UniProtAcc | O61742 | |||||||
TREEFAM | TREEFAM_ID | TF106232 | |||||||
UniProt_GCRP | UniProtAcc | O61742 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | rpn | ||||||||
Allele (25) | |||||||||
Strain | WBStrain00036549 | ||||||||
WBStrain00036819 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (22) | |||||||||
Contained_in_operon | CEOP1640 | ||||||||
Ortholog (42) | |||||||||
Structured_description | Concise_description | rpn-10 encodes a protein that contains two ubiquitin interaction motifs and is a member of the von Willebrand factor, type A superfamily similar to the mouse 26S proteasome non-ATP regulatory subunit 4. | Curator_confirmed | WBPerson48 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Predicted to enable polyubiquitin modification-dependent protein binding activity. Involved in spermatogenesis and ubiquitin-dependent protein catabolic process. Located in cytoplasm and nucleus. Expressed in several structures, including excretory cell; gonad; intestine; pharynx; and vulva. Is an ortholog of human PSMD4 (proteasome 26S subunit ubiquitin receptor, non-ATPase 4). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | B0205.3 | |||||||
Corresponding_transcript | B0205.3.1 | ||||||||
Other_sequence (75) | |||||||||
Associated_feature | WBsf220285 | ||||||||
WBsf220286 | |||||||||
Experimental_info | RNAi_result (38) | ||||||||
Expr_pattern (6) | |||||||||
Drives_construct | WBCnstr00022776 | ||||||||
WBCnstr00035463 | |||||||||
Construct_product | WBCnstr00022776 | ||||||||
WBCnstr00035463 | |||||||||
Regulate_expr_cluster (2) | |||||||||
Antibody | WBAntibody00001171 | ||||||||
Microarray_results (23) | |||||||||
Expression_cluster (118) | |||||||||
Interaction (189) | |||||||||
WBProcess | WBbiopr:00000076 | ||||||||
Map_info | Map | I | Position | 5.06464 | Error | 0.001194 | |||
Positive | Positive_clone | B0205 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 4913 | |||||||
Pseudo_map_position | |||||||||
Reference (29) | |||||||||
Remark | Sequence connection from [Nayak S] | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |