WormBase Tree Display for Gene: WBGene00004428

WBGene00004428 SMap: S_parent: Sequence: M01F1
  Identity: Version: 1
    Name: CGC_name: rpl-16
      Sequence_name: M01F1.2
      Molecular_name: M01F1.2
        M01F1.2.1
        CE01030
      Other_name: CELE_M01F1.2 Accession_evidence: NDB BX284603
      Public_name: rpl-16
    DB_info: Database: AceView gene 3E592
        WormQTL gene WBGene00004428
        WormFlux gene WBGene00004428
        NDB locus_tag CELE_M01F1.2
        Panther gene CAEEL|WormBase=WBGene00004428|UniProtKB=Q27389
          family PTHR11545
        NCBI gene 175455
        RefSeq protein NM_001393308.1
        SwissProt UniProtAcc Q27389
        TREEFAM TREEFAM_ID TF300159
        UniProt_GCRP UniProtAcc Q27389
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rpl
    Allele: WBVar01500082
      WBVar01498832
      WBVar02151694
      WBVar00394168
      WBVar00394169
      WBVar00394170
      WBVar00816192
      WBVar00816193
      WBVar00816194
      WBVar00816195
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rpl16 using blastP
    RNASeq_FPKM (74)
    GO_annotation (11)
    Contained_in_operon: CEOP3124
    Ortholog (33)
    Paralog: WBGene00008769 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Concise_description: rpl-16 encodes a large ribosomal subunit L13a protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in negative regulation of translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL13A (ribosomal protein L13a). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: M01F1.2
    Corresponding_transcript: M01F1.2.1
    Other_sequence (363)
    Associated_feature: WBsf650907
      WBsf650908
      WBsf666646
      WBsf666647
      WBsf666648
      WBsf991791
      WBsf991792
      WBsf226355
      WBsf226356
  Experimental_info: RNAi_result: WBRNAi00050768 Inferred_automatically: RNAi_primary
      WBRNAi00050767 Inferred_automatically: RNAi_primary
      WBRNAi00006966 Inferred_automatically: RNAi_primary
      WBRNAi00027632 Inferred_automatically: RNAi_primary
      WBRNAi00095686 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027194
      Expr1032232
      Expr1154463
      Expr2015444
      Expr2033679
    Construct_product: WBCnstr00018306
    Microarray_results (20)
    Expression_cluster (126)
    Interaction (272)
  Map_info: Map: III Position: -6.27619 Error: 0.051521
    Positive: Positive_clone: M01F1 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00065861
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene