WormBase Tree Display for Gene: WBGene00004411
expand all nodes | collapse all nodes | view schema
| WBGene00004411 | SMap | S_parent | Sequence | C42D4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpc-1 | Person_evidence | WBPerson64 | |||||
| Sequence_name | C42D4.8 | ||||||||
| Molecular_name | C42D4.8 | ||||||||
| C42D4.8.1 | |||||||||
| CE31330 | |||||||||
| Other_name | rpo-1 | ||||||||
| CELE_C42D4.8 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | rpc-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpc | ||||||||
| Allele (35) | |||||||||
| Legacy_information | [C.elegansII] NMK. 4.8 kb transcript, strong hybridization to largest subunit of yeast RNA polymerase III. [Riddle and Bird 1989; DR] | ||||||||
| Strain | WBStrain00050866 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00000123 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012999 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to contribute to RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase III. Predicted to be located in nuclear lumen. Predicted to be part of RNA polymerase III complex. Human ortholog(s) of this gene implicated in Wiedemann-Rautenstrauch syndrome and hypomyelinating leukodystrophy 7. Is an ortholog of human POLR3A (RNA polymerase III subunit A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060794 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30074) | ||||
| DOID:0081333 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:30074) | ||||||
| Molecular_info | Corresponding_CDS | C42D4.8 | |||||||
| Corresponding_transcript | C42D4.8.1 | ||||||||
| Other_sequence (41) | |||||||||
| Associated_feature | WBsf668002 | ||||||||
| WBsf230226 | |||||||||
| WBsf230227 | |||||||||
| Gene_product_binds (132) | |||||||||
| Transcription_factor | WBTranscriptionFactor001157 | ||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Expr1023115 | ||||||||
| Expr1032216 | |||||||||
| Expr1146346 | |||||||||
| Expr2015431 | |||||||||
| Expr2033666 | |||||||||
| Drives_construct | WBCnstr00035506 | ||||||||
| Construct_product | WBCnstr00035506 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction (188) | |||||||||
| Map_info | Map | IV | Position | 3.29112 | Error | 6.6e-05 | |||
| Positive | Positive_clone | C42D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| DR#4 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001191 | ||||||||
| WBPaper00012562 | |||||||||
| WBPaper00014108 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044171 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00055253 | |||||||||
| WBPaper00063971 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
