WormBase Tree Display for Gene: WBGene00004129
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| WBGene00004129 | SMap | S_parent | Sequence | F53G2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | pqn-42 | Person_evidence | WBPerson625 | |||||
| Sequence_name | F53G2.4 | ||||||||
| Molecular_name | F53G2.4a | ||||||||
| F53G2.4a.1 | |||||||||
| CE41907 | |||||||||
| F53G2.4b | |||||||||
| CE41908 | |||||||||
| F53G2.4c | |||||||||
| CE41575 | |||||||||
| F53G2.4b.1 | |||||||||
| F53G2.4c.1 | |||||||||
| Other_name | CELE_F53G2.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | pqn-42 | ||||||||
| DB_info | Database | AceView | gene | 2C744 | |||||
| WormQTL | gene | WBGene00004129 | |||||||
| WormFlux | gene | WBGene00004129 | |||||||
| NDB | locus_tag | CELE_F53G2.4 | |||||||
| NCBI | gene | 173600 | |||||||
| RefSeq | protein | NM_061877.7 | |||||||
| NM_061876.8 | |||||||||
| NM_001129141.3 | |||||||||
| TrEMBL | UniProtAcc | H2L066 | |||||||
| A9D602 | |||||||||
| H2L065 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L066 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pqn | ||||||||
| Allele (220) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (29) | |||||||||
| Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||||
| WBPaper00012788 | |||||||||
| WBPaper00012830 | |||||||||
| WBPaper00012882 | |||||||||
| WBPaper00012897 | |||||||||
| WBPaper00013003 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in GABAergic neurons and muscle cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and daf-12 based on tiling array; microarray; and RNA-seq studies. Is affected by fourteen chemicals including Alovudine; stavudine; and Zidovudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F53G2.4a | |||||||
| F53G2.4b | |||||||||
| F53G2.4c | |||||||||
| Corresponding_CDS_history | F53G2.4a:wp86 | ||||||||
| F53G2.4a:wp90 | |||||||||
| F53G2.4a:wp185 | |||||||||
| F53G2.4b:wp90 | |||||||||
| F53G2.4b:wp185 | |||||||||
| Corresponding_transcript | F53G2.4a.1 | ||||||||
| F53G2.4b.1 | |||||||||
| F53G2.4c.1 | |||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf649930 | ||||||||
| WBsf665206 | |||||||||
| WBsf665398 | |||||||||
| WBsf665399 | |||||||||
| WBsf716974 | |||||||||
| WBsf986952 | |||||||||
| WBsf1011713 | |||||||||
| WBsf222767 | |||||||||
| WBsf222768 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015541 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015540 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048178 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00032715 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4946 | ||||||||
| Expr1023699 | |||||||||
| Expr1032004 | |||||||||
| Expr1151993 | |||||||||
| Expr2015053 | |||||||||
| Expr2033288 | |||||||||
| Drives_construct | WBCnstr00012359 | ||||||||
| Microarray_results (33) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction | WBInteraction000376144 | ||||||||
| WBInteraction000389036 | |||||||||
| Map_info | Map | II | Position | -13.2057 | Error | 0.134226 | |||
| Positive | Positive_clone | F53G2 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031003 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
